WormBase Tree Display for Gene: WBGene00001685
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| WBGene00001685 | SMap | S_parent | Sequence | K10B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gpd-3 | Person_evidence | WBPerson1051 | |||||
| Sequence_name | K10B3.7 | ||||||||
| Molecular_name | K10B3.7 | ||||||||
| K10B3.7.1 | |||||||||
| CE07370 | |||||||||
| Other_name | CELE_K10B3.7 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | gpd-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gpd | ||||||||
| Allele (25) | |||||||||
| Legacy_information | [C.elegansII] Deleted in Bergerac strains; no apparent phenotype. Encodes glyceraldehyde-3-phosphate-dehydrogenase, major muscle-specific isozyme(GAPDHase-2), expression increases postembryonically. Final gene in operon with mai-1, gpd-2. [Barrios et al. 1989; Spieth et al. 1993; HH; BL] | ||||||||
| Strain | WBStrain00037109 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOPX036 | ||||||||
| Ortholog (54) | |||||||||
| Paralog | WBGene00001683 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001684 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001686 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | gpd-3 encodes a predicted glyceraldehyde 3-phosphate dehydrogenase that affects embryonic viability; GPD-3 interacts with LIN-2 in two-hybrid assays. | Paper_evidence | WBPaper00003839 | |||||
| WBPaper00004651 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. Predicted to be involved in glycolytic process. Predicted to be located in cytosol. Expressed in several structures, including gonad; intestine; and pharynx. Human ortholog(s) of this gene implicated in Alzheimer's disease and lymphangioleiomyomatosis. Is an ortholog of human GAPDH (glyceraldehyde-3-phosphate dehydrogenase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4141) | ||||
| DOID:3319 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4141) | ||||||
| Molecular_info | Corresponding_CDS | K10B3.7 | |||||||
| Corresponding_transcript | K10B3.7.1 | ||||||||
| Other_sequence (55) | |||||||||
| Associated_feature | WBsf653809 | ||||||||
| WBsf670282 | |||||||||
| WBsf978989 | |||||||||
| WBsf982141 | |||||||||
| WBsf237143 | |||||||||
| WBsf237144 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Expr779 | ||||||||
| Expr4044 | |||||||||
| Expr12932 | |||||||||
| Expr13108 | |||||||||
| Expr15766 | |||||||||
| Expr1010311 | |||||||||
| Expr1031005 | |||||||||
| Expr1154190 | |||||||||
| Expr2012207 | |||||||||
| Expr2030443 | |||||||||
| Drives_construct | WBCnstr00021140 | ||||||||
| WBCnstr00036771 | |||||||||
| WBCnstr00042513 | |||||||||
| Construct_product (2) | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (246) | |||||||||
| Interaction (135) | |||||||||
| Map_info | Map | X | Position | -12.1532 | Error | 0.007375 | |||
| Positive | Positive_clone | HH#L16B | |||||||
| K10B3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference (53) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
