WormBase Tree Display for Gene: WBGene00001663
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| WBGene00001663 | SMap | S_parent | Sequence | T19C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gpa-1 | Person_evidence | WBPerson625 | |||||
| Sequence_name | T19C4.6 | ||||||||
| Molecular_name | T19C4.6a | ||||||||
| T19C4.6a.1 | |||||||||
| CE06470 | |||||||||
| T19C4.6b | |||||||||
| CE42473 | |||||||||
| T19C4.6b.1 | |||||||||
| Other_name | CELE_T19C4.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | gpa-1 | ||||||||
| DB_info | Database | AceView | gene | 5L656 | |||||
| WormQTL | gene | WBGene00001663 | |||||||
| WormFlux | gene | WBGene00001663 | |||||||
| NDB | locus_tag | CELE_T19C4.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001663|UniProtKB=P28051 | |||||||
| family | PTHR10218 | ||||||||
| NCBI | gene | 179546 | |||||||
| RefSeq | protein | NM_001129546.4 | |||||||
| NM_073439.3 | |||||||||
| SwissProt | UniProtAcc | P28051 | |||||||
| TrEMBL | UniProtAcc | B2D6M7 | |||||||
| UniProt_GCRP | UniProtAcc | P28051 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gpa | ||||||||
| Allele (53) | |||||||||
| Legacy_information | [C.elegansII] pk1 : Tc1 insertion. Also excision derivative, no detectable phenotype. Cloned: 48% identity to GPA-3; gpa-1:lacZ expressed in some amphid and phasmid neurons, spicular neurons, some anterior pharyngeal cells. [Lochrie et al. 1991; PS; NL] | ||||||||
| Strain | WBStrain00028898 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (46) | |||||||||
| Paralog (21) | |||||||||
| Structured_description | Concise_description | gpa-1 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that is involved in chemotaxis to water-soluble odorants; it is expressed in sensory neurons and in the spicule and phasmid neurons of the male tail. | Curator_confirmed | WBPerson48 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Expressed in several structures, including SPD; chemosensory neurons; head mesodermal cell; pharyngeal neurons; and postcloacal sensillum. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T19C4.6a | |||||||
| T19C4.6b | |||||||||
| Corresponding_transcript | T19C4.6a.1 | ||||||||
| T19C4.6b.1 | |||||||||
| Other_sequence | Oden_isotig14911 | ||||||||
| Dviv_isotig33463 | |||||||||
| JI238621.1 | |||||||||
| Oden_isotig14910 | |||||||||
| JO473508.1 | |||||||||
| Associated_feature | WBsf669360 | ||||||||
| WBsf1001286 | |||||||||
| WBsf1001287 | |||||||||
| WBsf1020415 | |||||||||
| WBsf1020416 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00053517 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027599 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018833 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr522 | ||||||||
| Expr1303 | |||||||||
| Expr15370 | |||||||||
| Expr1025482 | |||||||||
| Expr1157085 | |||||||||
| Expr2012190 | |||||||||
| Expr2030426 | |||||||||
| Drives_construct | WBCnstr00001684 | ||||||||
| WBCnstr00004644 | |||||||||
| WBCnstr00004645 | |||||||||
| WBCnstr00004648 | |||||||||
| WBCnstr00036792 | |||||||||
| Construct_product | WBCnstr00001681 | ||||||||
| WBCnstr00001684 | |||||||||
| WBCnstr00010199 | |||||||||
| WBCnstr00036792 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (149) | |||||||||
| Interaction (27) | |||||||||
| WBProcess | WBbiopr:00000017 | ||||||||
| Map_info | Map | V | Position | 2.96783 | Error | 0.001182 | |||
| Positive | Positive_clone | PS#25A12 | |||||||
| T19C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001401 | ||||||||
| WBPaper00001617 | |||||||||
| WBPaper00001672 | |||||||||
| WBPaper00001784 | |||||||||
| WBPaper00001799 | |||||||||
| WBPaper00002314 | |||||||||
| WBPaper00002903 | |||||||||
| WBPaper00003453 | |||||||||
| WBPaper00003465 | |||||||||
| WBPaper00003659 | |||||||||
| WBPaper00004366 | |||||||||
| WBPaper00006103 | |||||||||
| WBPaper00006193 | |||||||||
| WBPaper00006194 | |||||||||
| WBPaper00006465 | |||||||||
| WBPaper00011663 | |||||||||
| WBPaper00011793 | |||||||||
| WBPaper00014412 | |||||||||
| WBPaper00014614 | |||||||||
| WBPaper00014628 | |||||||||
| WBPaper00014676 | |||||||||
| WBPaper00014754 | |||||||||
| WBPaper00014801 | |||||||||
| WBPaper00015087 | |||||||||
| WBPaper00015629 | |||||||||
| WBPaper00018938 | |||||||||
| WBPaper00022401 | |||||||||
| WBPaper00022403 | |||||||||
| WBPaper00022803 | |||||||||
| WBPaper00023067 | |||||||||
| WBPaper00024449 | |||||||||
| WBPaper00024990 | |||||||||
| WBPaper00025102 | |||||||||
| WBPaper00025339 | |||||||||
| WBPaper00027029 | |||||||||
| WBPaper00028339 | |||||||||
| WBPaper00028950 | |||||||||
| WBPaper00029015 | |||||||||
| WBPaper00029025 | |||||||||
| WBPaper00031303 | |||||||||
| WBPaper00031420 | |||||||||
| WBPaper00031936 | |||||||||
| WBPaper00035128 | |||||||||
| WBPaper00036207 | |||||||||
| WBPaper00040144 | |||||||||
| WBPaper00040879 | |||||||||
| WBPaper00043908 | |||||||||
| WBPaper00063944 | |||||||||
| WBPaper00064634 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
