WormBase Tree Display for Gene: WBGene00001579
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| WBGene00001579 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gex-2 | Person_evidence | WBPerson419 | |||||
| Sequence_name | F56A11.1 | ||||||||
| Molecular_name | F56A11.1 | ||||||||
| F56A11.1.1 | |||||||||
| CE31351 | |||||||||
| Other_name | CELE_F56A11.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | gex-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gex | ||||||||
| Allele (162) | |||||||||
| Strain | WBStrain00036391 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (50) | |||||||||
| Structured_description | Concise_description | The gex-2 gene encodes a homolog of p140/Sra-1, a mammalian protein ligand of the small GTPase Rac1; gex-2 is required for tissue morphogenesis and cell migrations. | Paper_evidence | WBPaper00005149 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA 7-methylguanosine cap binding activity. Involved in several processes, including embryonic body morphogenesis; positive regulation of clathrin-dependent endocytosis; and positive regulation of egg-laying behavior. Located in cell junction. Part of SCAR complex. Human ortholog(s) of this gene implicated in several diseases, including Schaaf-Yang syndrome; autism spectrum disorder; and epilepsy (multiple). Is an ortholog of human CYFIP1 (cytoplasmic FMR1 interacting protein 1) and CYFIP2 (cytoplasmic FMR1 interacting protein 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111715 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13759) | ||||
| DOID:0080430 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13760) | ||||||
| DOID:0060041 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13759) | ||||||
| DOID:3328 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13759) | ||||||
| DOID:5419 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13759) | ||||||
| Molecular_info | Corresponding_CDS | F56A11.1 | |||||||
| Corresponding_CDS_history | F56A11.1:wp129 | ||||||||
| Corresponding_transcript | F56A11.1.1 | ||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf645763 | ||||||||
| WBsf995193 | |||||||||
| WBsf995194 | |||||||||
| WBsf1016569 | |||||||||
| WBsf227856 | |||||||||
| WBsf227857 | |||||||||
| WBsf227858 | |||||||||
| WBsf227859 | |||||||||
| Experimental_info | RNAi_result (33) | ||||||||
| Expr_pattern | Expr1827 | ||||||||
| Expr1026712 | |||||||||
| Expr1030945 | |||||||||
| Expr1152359 | |||||||||
| Expr2012023 | |||||||||
| Expr2030259 | |||||||||
| Drives_construct | WBCnstr00036849 | ||||||||
| Construct_product | WBCnstr00036849 | ||||||||
| Antibody | WBAntibody00000462 | ||||||||
| WBAntibody00000463 | |||||||||
| Microarray_results | SMD_F56A11.1 | ||||||||
| SMD_F56A11.1:2 | |||||||||
| 188154_s_at | |||||||||
| A_12_P106014 | |||||||||
| Aff_F56A11.1 | |||||||||
| GPL13394_WBGene00001579 | |||||||||
| GPL13914_F56A11.1 | |||||||||
| GPL14144_F56A11.1_1500-1559_0.807_94_C | |||||||||
| GPL14144_F56A11.1_3287-3346_0.917_12_B | |||||||||
| GPL14144_F56A11.1_3570-3629_0.936_5_A | |||||||||
| GPL19516_CGZ0024434 | |||||||||
| GPL21109_F56A11.1 | |||||||||
| GPL3518_CE31351 | |||||||||
| GPL8304_CE_WBGene00001579_A | |||||||||
| GPL8304_CE_WBGene00001579_B | |||||||||
| GPL8673_F56A11_1P02478 | |||||||||
| GPL8673_F56A11_1P03085 | |||||||||
| GPL8673_F56A11_1P03317 | |||||||||
| GPL9450_F56A11.1 | |||||||||
| cea2.c.29149 | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction (42) | |||||||||
| Map_info | Map | IV | Position | -24.7527 | Error | 0.274792 | |||
| Positive | Positive_clone | F56A11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5641 | |||||||
| Pseudo_map_position | |||||||||
| Reference (36) | |||||||||
| Remark | the 3' end is on C18H7 (nucleotides 1 to 3,000) | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
