WormBase Tree Display for Gene: WBGene00001372
expand all nodes | collapse all nodes | view schema
| WBGene00001372 | SMap | S_parent | Sequence | R09B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | exo-3 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | R09B3.1 | ||||||||
| Molecular_name | R09B3.1a | ||||||||
| R09B3.1a.1 | |||||||||
| CE16306 | |||||||||
| R09B3.1b | |||||||||
| CE38407 | |||||||||
| R09B3.1a.2 | |||||||||
| R09B3.1b.1 | |||||||||
| Other_name | CELE_R09B3.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | exo-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | exo | ||||||||
| Allele | WBVar00094519 | Inferred_automatically | From strain object: RB2548 | ||||||
| WBVar00094529 | Inferred_automatically | From strain object: RB2554 | |||||||
| WBVar02121525 | |||||||||
| WBVar00675512 | |||||||||
| WBVar00675513 | |||||||||
| WBVar00675514 | |||||||||
| WBVar00675515 | |||||||||
| WBVar00675516 | |||||||||
| WBVar00675517 | |||||||||
| WBVar00675518 | |||||||||
| WBVar00675519 | |||||||||
| WBVar01499739 | |||||||||
| WBVar00252872 | |||||||||
| WBVar02121935 | |||||||||
| WBVar00347020 | |||||||||
| WBVar00347021 | |||||||||
| WBVar00347022 | |||||||||
| WBVar00347023 | |||||||||
| WBVar00347024 | |||||||||
| WBVar00347025 | |||||||||
| WBVar00347026 | |||||||||
| WBVar02016566 | |||||||||
| WBVar02122510 | |||||||||
| WBVar01433408 | |||||||||
| WBVar01425533 | |||||||||
| WBVar01433409 | |||||||||
| WBVar01425544 | |||||||||
| WBVar01433410 | |||||||||
| WBVar01433411 | |||||||||
| WBVar01499788 | |||||||||
| WBVar01499421 | |||||||||
| WBVar01499422 | |||||||||
| WBVar01499055 | |||||||||
| WBVar00234032 | |||||||||
| WBVar02122899 | |||||||||
| WBVar01713561 | |||||||||
| WBVar01713562 | |||||||||
| WBVar01499999 | |||||||||
| WBVar00158001 | |||||||||
| WBVar00158002 | |||||||||
| WBVar00158003 | |||||||||
| WBVar02121099 | |||||||||
| WBVar01663787 | |||||||||
| WBVar01663788 | |||||||||
| WBVar01663789 | |||||||||
| WBVar01890420 | |||||||||
| WBVar02120579 | |||||||||
| WBVar01498959 | |||||||||
| Strain | WBStrain00033223 | ||||||||
| WBStrain00033229 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Contained_in_operon | CEOP1656 | ||||||||
| Ortholog (33) | |||||||||
| Structured_description | Concise_description | exo-3 encodes an ortholog of human APEX/REF1 and rat apurinic/apyrimidinic endonuclease (AP endonuclease 1); EXO-3 is implicated in a DNA damage checkpoint pathway that affects embryonic and larval viability. | Paper_evidence | WBPaper00005039 | |||||
| WBPaper00005599 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables DNA-(apurinic or apyrimidinic site) endonuclease activity and phosphoric diester hydrolase activity. Involved in base-excision repair; embryo development; and nematode larval development. Predicted to be located in nucleus. Expressed in hermaphrodite gonad and male gonad. Human ortholog(s) of this gene implicated in several diseases, including female reproductive organ cancer (multiple); prostate carcinoma in situ; and spina bifida. Is an ortholog of human APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (11) | ||||||||
| Molecular_info | Corresponding_CDS | R09B3.1a | |||||||
| R09B3.1b | |||||||||
| Corresponding_transcript | R09B3.1a.1 | ||||||||
| R09B3.1a.2 | |||||||||
| R09B3.1b.1 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf047562 | ||||||||
| WBsf220375 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr12286 | ||||||||
| Expr14296 | |||||||||
| Expr1019771 | |||||||||
| Expr1030827 | |||||||||
| Expr1155260 | |||||||||
| Expr2011397 | |||||||||
| Expr2029633 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction (140) | |||||||||
| Map_info | Map | I | Position | 12.9229 | Error | 0.002952 | |||
| Positive | Positive_clone | R09B3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (28) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
