WormBase Tree Display for Gene: WBGene00001340
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| WBGene00001340 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | etr-1 | Person_evidence | WBPerson261 | |||||
| Sequence_name | T01D1.2 | ||||||||
| Molecular_name | T01D1.2a | ||||||||
| T01D1.2a.1 | |||||||||
| CE12942 | |||||||||
| T01D1.2b | |||||||||
| CE41582 | |||||||||
| T01D1.2d | |||||||||
| CE41583 | |||||||||
| T01D1.2e | |||||||||
| CE41584 | |||||||||
| T01D1.2f | |||||||||
| CE41585 | |||||||||
| T01D1.2g | |||||||||
| CE41586 | |||||||||
| T01D1.2l | |||||||||
| CE50637 | |||||||||
| T01D1.2m | |||||||||
| CE50668 | |||||||||
| T01D1.2n | |||||||||
| CE50589 | |||||||||
| T01D1.2o | |||||||||
| CE50621 | |||||||||
| T01D1.2p | |||||||||
| CE50615 | |||||||||
| T01D1.2q | |||||||||
| CE28070 | |||||||||
| T01D1.2r | |||||||||
| CE50578 | |||||||||
| T01D1.2s | |||||||||
| CE50607 | |||||||||
| T01D1.2t | |||||||||
| CE50645 | |||||||||
| T01D1.2u | |||||||||
| CE50532 | |||||||||
| T01D1.2v | |||||||||
| CE50620 | |||||||||
| T01D1.2w | |||||||||
| CE50674 | |||||||||
| T01D1.2x | |||||||||
| CE50653 | |||||||||
| T01D1.2a.2 | |||||||||
| T01D1.2a.3 | |||||||||
| T01D1.2a.4 | |||||||||
| T01D1.2b.1 | |||||||||
| T01D1.2c | |||||||||
| T01D1.2d.1 | |||||||||
| T01D1.2d.2 | |||||||||
| T01D1.2e.1 | |||||||||
| T01D1.2e.2 | |||||||||
| T01D1.2e.3 | |||||||||
| T01D1.2e.4 | |||||||||
| T01D1.2f.1 | |||||||||
| T01D1.2f.2 | |||||||||
| T01D1.2f.3 | |||||||||
| T01D1.2g.1 | |||||||||
| T01D1.2g.2 | |||||||||
| T01D1.2g.3 | |||||||||
| T01D1.2l.1 | |||||||||
| T01D1.2l.2 | |||||||||
| T01D1.2m.1 | |||||||||
| T01D1.2n.1 | |||||||||
| T01D1.2o.1 | |||||||||
| T01D1.2p.1 | |||||||||
| T01D1.2q.1 | |||||||||
| T01D1.2r.1 | |||||||||
| T01D1.2s.1 | |||||||||
| T01D1.2t.1 | |||||||||
| T01D1.2u.1 | |||||||||
| T01D1.2v.1 | |||||||||
| T01D1.2w.1 | |||||||||
| T01D1.2x.1 | |||||||||
| Other_name | CELE_T01D1.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | etr-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | etr | ||||||||
| Allele (130) | |||||||||
| Possibly_affected_by | WBVar02152955 | ||||||||
| WBVar02152954 | |||||||||
| Strain | WBStrain00054854 | ||||||||
| WBStrain00054853 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (43) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | etr-1 encodes a muscle-specific ELAV-type RNA-binding protein, whose homologs include Drosophila ELAV and human CUG-BINDING PROTEIN (CUGBP1; OMIM:601074); etr-1 function is required for embryonic muscle development, which suggests that ETR-1's homology to CUG-BP (implicated in myotonic dystrophy) might reflect conserved roles in development. | Paper_evidence | WBPaper00003747 | |||||
| WBPaper00005068 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA 3'-UTR binding activity. Involved in determination of adult lifespan. Located in nucleus. Expressed in body wall musculature; cloacal sphincter muscle; copulatory spicule; non-striated muscle; and somatic gonad. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 97. Is an ortholog of human CELF1 (CUGBP Elav-like family member 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070383 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2550) | ||||
| Molecular_info | Corresponding_CDS (19) | ||||||||
| Corresponding_CDS_history | T01D1.2b:wp182 | ||||||||
| T01D1.2c:wp247 | |||||||||
| Corresponding_transcript (32) | |||||||||
| Other_sequence (57) | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result (25) | ||||||||
| Expr_pattern | Expr1204 | ||||||||
| Expr9488 | |||||||||
| Expr13464 | |||||||||
| Expr1026122 | |||||||||
| Expr1030819 | |||||||||
| Expr1155747 | |||||||||
| Expr2011378 | |||||||||
| Expr2029614 | |||||||||
| Drives_construct | WBCnstr00010149 | ||||||||
| WBCnstr00036992 | |||||||||
| Construct_product | WBCnstr00014053 | ||||||||
| WBCnstr00036992 | |||||||||
| Regulate_expr_cluster | WBPaper00062325:etr-1(lq61)_downregulated | ||||||||
| WBPaper00062325:etr-1(lq61)_upregulated | |||||||||
| WBPaper00062325:muscle_depleted_coding-RNA | |||||||||
| WBPaper00062325:muscle_depleted_noncoding-RNA | |||||||||
| WBPaper00062325:muscle_enriched_coding-RNA | |||||||||
| WBPaper00062325:muscle_enriched_noncoding-RNA | |||||||||
| Antibody | WBAntibody00002767 | ||||||||
| Microarray_results | SMD_T01D1.2 | ||||||||
| 172031_x_at | |||||||||
| 174097_at | |||||||||
| 192227_s_at | |||||||||
| A_12_P120167 | |||||||||
| A_12_P152070 | |||||||||
| A_12_P152071 | |||||||||
| A_12_P152072 | |||||||||
| A_12_P152073 | |||||||||
| A_12_P152074 | |||||||||
| A_12_P153655 | |||||||||
| A_12_P153656 | |||||||||
| A_12_P153657 | |||||||||
| A_12_P153658 | |||||||||
| Aff_T01D1.2A | |||||||||
| GPL13394_WBGene00001340 | |||||||||
| GPL13914_T01D1.2 | |||||||||
| GPL14144_T01D1.2f_1543-1602_0.947_2_B | |||||||||
| GPL14144_T01D1.2f_1602-1661_0.936_4_C | |||||||||
| GPL14144_T01D1.2f_1720-1779_0.958_1_A | |||||||||
| GPL19516_CGZ0032610 | |||||||||
| GPL19516_CGZ0032611 | |||||||||
| GPL19516_CGZ0032612 | |||||||||
| GPL19516_CGZ0032613 | |||||||||
| GPL19516_CGZ0032614 | |||||||||
| GPL19516_CGZ0032615 | |||||||||
| GPL19516_CGZ0032616 | |||||||||
| GPL19516_CGZ0032617 | |||||||||
| GPL19516_CGZ0032618 | |||||||||
| GPL19516_CGZ0032619 | |||||||||
| GPL19516_CGZ0032620 | |||||||||
| GPL19516_CGZ0032621 | |||||||||
| GPL19516_CGZ0032622 | |||||||||
| GPL19516_CGZ0032623 | |||||||||
| GPL19516_CGZ0032624 | |||||||||
| GPL19516_CGZ0032625 | |||||||||
| GPL19516_CGZ0032626 | |||||||||
| GPL19516_CGZ0032627 | |||||||||
| GPL19516_CGZ0032628 | |||||||||
| GPL19516_CGZ0032629 | |||||||||
| GPL19516_CGZ0032630 | |||||||||
| GPL19516_CGZ0032631 | |||||||||
| GPL19516_CGZ0032632 | |||||||||
| GPL19516_CGZ0032633 | |||||||||
| GPL19516_CGZ0032634 | |||||||||
| GPL19516_CGZ0032635 | |||||||||
| GPL19516_CGZ0032636 | |||||||||
| GPL19516_CGZ0032637 | |||||||||
| GPL19516_CGZ0032638 | |||||||||
| GPL19516_CGZ0032639 | |||||||||
| GPL19516_CGZ0032640 | |||||||||
| GPL21109_T01D1.2a.1 | |||||||||
| GPL21109_T01D1.2a.2 | |||||||||
| GPL21109_T01D1.2a.3 | |||||||||
| GPL21109_T01D1.2e.4 | |||||||||
| GPL3518_CE12942 | |||||||||
| GPL3518_CE28070 | |||||||||
| GPL8304_CE_WBGene00001340_A | |||||||||
| GPL8304_CE_WBGene00001340_B | |||||||||
| GPL8304_CE_WBGene00001340_C | |||||||||
| GPL8673_T01D1_2aP00255 | |||||||||
| GPL8673_T01D1_2aP00894 | |||||||||
| GPL8673_T01D1_2aP00904 | |||||||||
| GPL8673_T01D1_2bP00552 | |||||||||
| GPL8673_T01D1_2bP00704 | |||||||||
| GPL8673_T01D1_2bP00718 | |||||||||
| GPL8673_T01D1_2cP00006 | |||||||||
| GPL8673_T01D1_2cP00075 | |||||||||
| GPL8673_T01D1_2cP00133 | |||||||||
| GPL9450_T01D1.2a | |||||||||
| GPL9450_T01D1.2b | |||||||||
| cea2.3.22250 | |||||||||
| cea2.d.05181 | |||||||||
| cea2.d.05182 | |||||||||
| Expression_cluster (115) | |||||||||
| Interaction (42) | |||||||||
| Map_info | Map | II | Position | -15.9026 | Error | 0.013546 | |||
| Positive | Positive_clone | T01D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
