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WormBase Tree Display for Gene: WBGene00001235

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Name Class

WBGene00001235SMapS_parentSequenceY41C4A
IdentityVersion1
NameCGC_nameelb-1Person_evidenceWBPerson322
Sequence_nameY41C4A.10
Molecular_nameY41C4A.10
Y41C4A.10.1
CE20250
Other_name3L686Accession_evidenceEMBLAF326942
CELE_Y41C4A.10Accession_evidenceNDBBX284603
Public_nameelb-1
DB_infoDatabaseAceViewgene3M808
WormQTLgeneWBGene00001235
WormFluxgeneWBGene00001235
NDBlocus_tagCELE_Y41C4A.10
PanthergeneCAEEL|WormBase=WBGene00001235|UniProtKB=G5ECR7
familyPTHR13248
NCBIgene176605
RefSeqproteinNM_067116.7
TREEFAMTREEFAM_IDTF325964
TrEMBLUniProtAccG5ECR7
UniProt_GCRPUniProtAccG5ECR7
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:23WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classelb
Allele (15)
StrainWBStrain00051184
RNASeq_FPKM (74)
GO_annotation00012393
00012394
00012395
00012396
00012397
00108490
00108491
00108492
Contained_in_operonCEOP3728
OrthologWBGene00063070Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034027Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00149795Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00131899Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00226773Brugia malayiFrom_analysisWormBase-Compara
CSP21.g1986Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6298Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8461Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11272Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21057Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14132Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13747Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5360Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1898Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24602Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20582Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00001.g117Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-elb-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold488.g1993Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02986.g28659Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17630Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010262Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30093800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g9079Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00211444Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244340Onchocerca volvulusFrom_analysisWormBase-Compara
FB:FBgn0023212Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:11619Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1914923Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
MGI:1860403Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
RGD:621200Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
RGD:1564031Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
Panther
RGD:41101549Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
Structured_descriptionConcise_descriptionelb-1 encodes an Elongin B ortholog required for chromosome condensationand segregation during mitosis and meiotic division II, and also for cellproliferation (probably through degradation of CKI-1); elb-1(RNAi) animalstend to arrest at the second meiotic cell division, with escapers showingmany other defects in chromosomal dynamics and cell cycle control such asabnormal pronuclear rotation and cortical protrusion, aberrant chromosomalstructures in the intestine, and deficient germ cell proliferation; ELB-1interacts with ELC-1 and ELC-2 in bacterial two-hybrid experiments.Paper_evidenceWBPaper00026616
Curator_confirmedWBPerson567
Date_last_updated23 Aug 2006 00:00:00
Automated_descriptionEnables protein domain specific binding activity. Predicted to be involved in transcription elongation by RNA polymerase II. Part of Cul2-RING ubiquitin ligase complex. Is an ortholog of human ELOB (elongin B).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY41C4A.10
Corresponding_transcriptY41C4A.10.1
Other_sequenceAF326942
CBC12953_1
CRC11177_1
Associated_featureWBsf651515
WBsf994473
WBsf227594
Experimental_infoRNAi_result (39)
Expr_patternExpr1016832
Expr1030783
Expr1159837
Expr2011270
Expr2029506
Microarray_results (19)
Expression_cluster (96)
Interaction (76)
Map_infoMapIIIPosition12.0059Error0.028827
PositivePositive_cloneY41C4AInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00024321
WBPaper00024458
WBPaper00026616
WBPaper00027315
WBPaper00030834
WBPaper00037728
WBPaper00038491
WBPaper00041771
WBPaper00048493
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene