WormBase Tree Display for Gene: WBGene00001136
expand all nodes | collapse all nodes | view schema
| WBGene00001136 | SMap | S_parent | Sequence | F13G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | eat-5 | Person_evidence | WBPerson32 | |||||
| Sequence_name | F13G3.8 | ||||||||
| Molecular_name | F13G3.8 | ||||||||
| F13G3.8.1 | |||||||||
| CE05620 | |||||||||
| Other_name | CELE_F13G3.8 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | eat-5 | ||||||||
| DB_info | Database | AceView | gene | 1H886 | |||||
| WormQTL | gene | WBGene00001136 | |||||||
| WormFlux | gene | WBGene00001136 | |||||||
| NDB | locus_tag | CELE_F13G3.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001136|UniProtKB=Q27295 | |||||||
| family | PTHR11893 | ||||||||
| NCBI | gene | 172480 | |||||||
| RefSeq | protein | NM_059667.8 | |||||||
| SwissProt | UniProtAcc | Q27295 | |||||||
| UniProt_GCRP | UniProtAcc | Q27295 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | eat | ||||||||
| Allele (38) | |||||||||
| Legacy_information | [Leon Avery] Corpus and terminal bulb contractions are not sunchronized. Usually the terminal bulb pumps more slowly than the corpus. This phenotype is penetrant in young larvae. However, many adults (about half, but no counts have been done) are normal. | ||||||||
| See also ad464 | |||||||||
| Strain | WBStrain00005573 | ||||||||
| WBStrain00005462 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (38) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | eat-5 encodes an innexin, expressed in pharyngeal muscle cell groups pm4 and pm5, that is required for synchronized pharyngeal muscle contractions, and for normal electrical connections between pharyngeal muscle cells; EAT-5 forms electrically permeable intercellular channels (gap junctions), with a predicted membrane topology analogous to that of connexins, which affects electrical coupling between different parts of the pharynx and thus affects feeding. | Paper_evidence | WBPaper00001709 | |||||
| WBPaper00002505 | |||||||||
| WBPaper00003184 | |||||||||
| Curator_confirmed | WBPerson363 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable gap junction hemi-channel activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in gap junction and plasma membrane. Expressed in K' cell and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F13G3.8 | |||||||
| Corresponding_transcript | F13G3.8.1 | ||||||||
| Other_sequence | U59210 | ||||||||
| Dviv_isotig16520 | |||||||||
| BXC00287_1 | |||||||||
| Associated_feature | WBsf664433 | ||||||||
| WBsf219738 | |||||||||
| WBsf219739 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1564 | ||||||||
| Expr1943 | |||||||||
| Expr3598 | |||||||||
| Expr8691 | |||||||||
| Expr1018084 | |||||||||
| Expr1030725 | |||||||||
| Expr1148496 | |||||||||
| Expr2011159 | |||||||||
| Expr2029395 | |||||||||
| Drives_construct | WBCnstr00010335 | ||||||||
| WBCnstr00010534 | |||||||||
| WBCnstr00013460 | |||||||||
| WBCnstr00016958 | |||||||||
| WBCnstr00037069 | |||||||||
| Construct_product | WBCnstr00010335 | ||||||||
| WBCnstr00011522 | |||||||||
| WBCnstr00037069 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (69) | |||||||||
| Interaction | WBInteraction000127524 | ||||||||
| WBInteraction000137915 | |||||||||
| WBInteraction000140929 | |||||||||
| WBInteraction000147231 | |||||||||
| WBInteraction000147232 | |||||||||
| WBInteraction000153181 | |||||||||
| WBInteraction000185232 | |||||||||
| WBInteraction000346831 | |||||||||
| WBInteraction000524390 | |||||||||
| Map_info | Map | I | Position | 1.89646 | Error | 0.002673 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | B0332 | |||||||
| F13G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| T21B9 | |||||||||
| Mapping_data | 2_point | 6194 | |||||||
| 6195 | |||||||||
| Multi_point (16) | |||||||||
| Pos_neg_data | 8294 | ||||||||
| 8295 | |||||||||
| Reference (37) | |||||||||
| Method | Gene |
