WormBase Tree Display for Gene: WBGene00001110
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| WBGene00001110 | Evidence | Person_evidence | WBPerson2345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F38B7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | duo-1 | |||||||
| Sequence_name | F38B7.5 | ||||||||
| Molecular_name | F38B7.5 | ||||||||
| F38B7.5.1 | |||||||||
| CE47600 | |||||||||
| Other_name | usp-1 | Accession_evidence | EMBL | AB095019 | |||||
| CELE_F38B7.5 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | duo-1 | ||||||||
| DB_info | Database | AceView | gene | 5M37 | |||||
| WormQTL | gene | WBGene00001110 | |||||||
| WormFlux | gene | WBGene00001110 | |||||||
| NDB | locus_tag | CELE_F38B7.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001110|UniProtKB=Q7JLI8 | |||||||
| family | PTHR12419 | ||||||||
| NCBI | gene | 179586 | |||||||
| RefSeq | protein | NM_073530.8 | |||||||
| TREEFAM | TREEFAM_ID | TF323032 | |||||||
| TrEMBL | UniProtAcc | Q7JLI8 | |||||||
| UniProt_GCRP | UniProtAcc | Q7JLI8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | duo | ||||||||
| Allele (54) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00082182 | ||||||||
| 00082183 | |||||||||
| 00108285 | |||||||||
| 00108286 | |||||||||
| Ortholog (20) | |||||||||
| Paralog (21) | |||||||||
| Structured_description | Automated_description | Predicted to enable cysteine-type deubiquitinase activity. Is an ortholog of human OTUD1 (OTU deubiquitinase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38B7.5 | |||||||
| Corresponding_CDS_history | F38B7.5:wp95 | ||||||||
| F38B7.5:wp231 | |||||||||
| Corresponding_transcript | F38B7.5.1 | ||||||||
| Other_sequence | AB095019 | ||||||||
| CBC01724_1 | |||||||||
| CR06994 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr1021645 | ||||||||
| Expr1030708 | |||||||||
| Expr1150577 | |||||||||
| Expr2011114 | |||||||||
| Expr2029350 | |||||||||
| Drives_construct | WBCnstr00037079 | ||||||||
| Construct_product | WBCnstr00037079 | ||||||||
| Microarray_results | SMD_F38B7.5 | ||||||||
| SMD_F38B7.5:2 | |||||||||
| 194081_at | |||||||||
| A_12_P108273 | |||||||||
| A_12_P142940 | |||||||||
| A_12_P142941 | |||||||||
| Aff_F38B7.5 | |||||||||
| GPL14144_F38B7.5_1222-1281_0.869_43_C | |||||||||
| GPL14144_F38B7.5_2156-2215_0.688_245_B | |||||||||
| GPL14144_F38B7.5_2298-2357_0.960_2_A | |||||||||
| GPL19516_CGZ0020432 | |||||||||
| GPL21109_F38B7.5 | |||||||||
| GPL3518_CE05829 | |||||||||
| GPL8304_CE_WBGene00001110_A | |||||||||
| GPL8304_CE_WBGene00001110_B | |||||||||
| GPL8673_F38B7_5P01103 | |||||||||
| GPL8673_F38B7_5P01531 | |||||||||
| GPL8673_F38B7_5P02021 | |||||||||
| GPL9450_F38B7.5 | |||||||||
| cea2.c.36136 | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | V | Position | 3.20376 | Error | 0.001354 | |||
| Positive | Positive_clone | F38B7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5449 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010019 | ||||||||
| WBPaper00030965 | |||||||||
| WBPaper00036636 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059884 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
