WormBase Tree Display for Gene: WBGene00001074
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| WBGene00001074 | SMap | S_parent | Sequence | F30B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dpy-13 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F30B5.1 | ||||||||
| Molecular_name (3) | |||||||||
| Other_name | dpy-16 | ||||||||
| CELE_F30B5.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | dpy-13 | ||||||||
| DB_info | Database | AceView | gene | 4F1 | |||||
| WormQTL | gene | WBGene00001074 | |||||||
| WormFlux | gene | WBGene00001074 | |||||||
| NDB | locus_tag | CELE_F30B5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001074|UniProtKB=P17657 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 177187 | |||||||
| RefSeq | protein | NM_068118.6 | |||||||
| SwissProt | UniProtAcc | P17657 | |||||||
| UniProt_GCRP | UniProtAcc | P17657 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00143017 | ||||||||
| Allele (28) | |||||||||
| Legacy_information | e184sd : strong dumpy; e184/+ is medium dumpy. ES3 (all stages). ME2. NA7. (e458 e1165icr e225 (pka dpy-16 : recessive medium dumpy)). | ||||||||
| See dpy-13. | |||||||||
| See also e225 | |||||||||
| [C.elegansII] e184sd : strong dumpy; e184/+ is medium dumpy. ES3 (all stages). ME2. NA13: e458, e1165icr, e225 (pka dpy-16 : recessive medium dumpy), e458, m399::Tc1, e1165, etc. Cloned: encodes 302 aa collagen; dpy-13 family includes col-2, col-34, sqt-3; e184 is in-frame deletion, e458 is 673 bp deletion, null, strong dumpy.Expressed at each larval stage, 4 to 2.5 hours pre-lethargus. [Brenner 1974; von Mende et al. 1988; CH; IA] | |||||||||
| Strain (72) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00039562 | ||||||||
| 00039563 | |||||||||
| 00039564 | |||||||||
| 00039565 | |||||||||
| 00039566 | |||||||||
| 00108196 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | dpy-13 encodes a member of the collagen superfamily containing 20 copies of the collagen triple helix repeat; transcipt levels oscillate, peaking once during each larval stage. | Paper_evidence | WBPaper00000031 | |||||
| WBPaper00001101 | |||||||||
| WBPaper00001621 | |||||||||
| WBPaper00002512 | |||||||||
| WBPaper00004651 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in collagen and cuticulin-based cuticle extracellular matrix. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F30B5.1 | |||||||
| Corresponding_transcript | F30B5.1.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf645909 | ||||||||
| WBsf996219 | |||||||||
| WBsf1017212 | |||||||||
| WBsf228168 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr618 | ||||||||
| Expr1011675 | |||||||||
| Expr1030682 | |||||||||
| Expr1149860 | |||||||||
| Expr2011057 | |||||||||
| Expr2029294 | |||||||||
| Drives_construct | WBCnstr00037098 | ||||||||
| Construct_product | WBCnstr00037098 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (295) | |||||||||
| Interaction (241) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | IV | Position | 0 | |||||
| Well_ordered | |||||||||
| Positive | Inside_rearr | mDp4 | |||||||
| Positive_clone | B0016 | ||||||||
| F30B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | 2_point (72) | ||||||||
| Multi_point (154) | |||||||||
| Pos_neg_data | 2162 | ||||||||
| 3697 | |||||||||
| 9113 | |||||||||
| Landmark_gene | |||||||||
| Reference (135) | |||||||||
| Method | Gene |
