WormBase Tree Display for Gene: WBGene00001065

WBGene00001065 SMap: S_parent: Sequence: EGAP7
  Identity: Version: 1
    Name: CGC_name: dpy-3 Person_evidence: WBPerson261
      Sequence_name: EGAP7.1
      Molecular_name: EGAP7.1
        EGAP7.1.1
        CE07013
      Other_name: dpy-12
        CELE_EGAP7.1 Accession_evidence: NDB BX284606
      Public_name: dpy-3
    DB_info: Database: AceView gene XC764
        WormQTL gene WBGene00001065
        WormFlux gene WBGene00001065
        NDB locus_tag CELE_EGAP7.1
        Panther gene CAEEL|WormBase=WBGene00001065|UniProtKB=Q19079
          family PTHR24637
        NCBI gene 180529
        RefSeq protein NM_075994.7
        TrEMBL UniProtAcc Q19079
        UniProt_GCRP UniProtAcc Q19079
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:22 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dpy
    Reference_allele: WBVar00142921
    Allele (27)
    Legacy_information: e27 : medium dumpy (non-roller). L1 non-dumpy. ES3 (all stages) ME1. NA > 10 (e2079 sc26 : left roller dumpy m39ts etc.).
      e182 : medium dumpy. ES3 (adult). ME1. NA1.
      [C.elegansII] e27 : medium dumpy (non-roller). L1 non-dumpy. Suppresses some alleles of glp-1, emb-5.ES3 (all stages) ME1. OA>10 : e2079, sc26 (left roller dumpy), e182 (pka dpy-12, medium dumpy, ES3 (adult), ME1), m39ts [Brenner 1974; EL]
    Strain (17)
    RNASeq_FPKM (74)
    GO_annotation: 00063404
      00063405
      00063406
      00063407
      00063408
      00063409
      00108189
    Ortholog: WBGene00052080 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00034701 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00154898 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00107002 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00126502 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00230450 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g3805 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g9172 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18943 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15651 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g21944 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16691 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7078 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19134 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18848 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01495.g16472 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-dpy-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16570 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00179.g6401 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16317 Caenorhabditis latens From_analysis: WormBase-Compara
      Pan_g11250 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0106000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18572 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248525 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00094213 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00115371 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00280009 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00265461 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288778 Trichuris muris From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-050707-1 Danio rerio From_analysis: Inparanoid
            SonicParanoid
      ZFIN:ZDB-GENE-080303-33 Danio rerio From_analysis: Inparanoid
            SonicParanoid
      HGNC:34071 Homo sapiens From_analysis: Inparanoid
            SonicParanoid
      HGNC:28732 Homo sapiens From_analysis: Inparanoid
            SonicParanoid
      HGNC:34072 Homo sapiens From_analysis: Inparanoid
            SonicParanoid
    Paralog (163)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Used to study skin disease. Is an ortholog of human C1QTNF9 (C1q and TNF related 9); C1QTNF9B (C1q and TNF related 9B); and OTOL1 (otolin 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Experimental_model: DOID:37 Homo sapiens Paper_evidence: WBPaper00061220
          Curator_confirmed: WBPerson324
          Date_last_updated: 02 May 2022 00:00:00
  Models_disease_in_annotation: WBDOannot00001174
  Molecular_info: Corresponding_CDS: EGAP7.1
    Corresponding_transcript: EGAP7.1.1
    Other_sequence (114)
    Associated_feature (13)
  Experimental_info: RNAi_result (16)
    Expr_pattern: Chronogram1645
      Expr1012140
      Expr1030674
      Expr1147697
      Expr2011073
      Expr2029310
    Drives_construct: WBCnstr00037106
    Construct_product: WBCnstr00037106
    Microarray_results (18)
    Expression_cluster (278)
    Interaction (176)
    WBProcess: WBbiopr:00000124
  Map_info: Map: X Position: -17.0217 Error: 0.010146
    Well_ordered
    Positive: Inside_rearr: mnDp52
        yDp14
        yDp16
        meDf6
      Positive_clone: EGAP7 Person_evidence: WBPerson297
          Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: mnDp69
    Mapping_data: 2_point (25)
      Multi_point (51)
      Pos_neg_data (32)
    Landmark_gene
  Reference (72)
  Remark: Sequence connection from [Johnstone IL], [020809 krb]
  Method: Gene