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WormBase Tree Display for Gene: WBGene00000969

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Name Class

WBGene00000969SMapS_parentSequenceF56D1
IdentityVersion1
NameCGC_namedhs-5Person_evidenceWBPerson651
Sequence_nameF56D1.5
Molecular_nameF56D1.5
F56D1.5.1
CE28036
Other_nameF56D1.eCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_F56D1.5Accession_evidenceNDBBX284602
Public_namedhs-5
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:22WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdhs
Allele (30)
StrainWBStrain00004713
WBStrain00004721
RNASeq_FPKM (74)
GO_annotation00056179
00056180
00056181
00056182
00056183
Ortholog (31)
Paralog (38)
Structured_descriptionConcise_descriptiondhs-5 encodes a possible steroid dehydrogenase; DHS-5 generally resembles short chain-type alcohol/other dehydrogenases, but has two predicted N-terminal transmembrane sequences, and its closest relatives in vertebrates are known or putative steroid dehydrogenases such as hydroxysteroid (17-beta) dehydrogenase 12 from mouse (also known as KIK-I or DHBK_MOUSE).Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable oxidoreductase activity. Predicted to be located in endoplasmic reticulum. Expressed in enteric muscle; hypodermis; and vm1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF56D1.5
Corresponding_transcriptF56D1.5.1
Other_sequence (34)
Associated_featureWBsf644195
WBsf654866
WBsf657593
WBsf716686
WBsf221284
Experimental_infoRNAi_resultWBRNAi00048684Inferred_automaticallyRNAi_primary
WBRNAi00048685Inferred_automaticallyRNAi_primary
WBRNAi00102778Inferred_automaticallyRNAi_primary
Expr_patternExpr3902
Expr1018035
Expr1030604
Expr1152443
Expr2010919
Expr2029158
Drives_constructWBCnstr00011735
WBCnstr00037170
Construct_productWBCnstr00037170
Microarray_results (17)
Expression_clusterWBPaper00031040:Cluster_1
WBPaper00032031:DConiospora_upregulated_OligoArray_24h
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037682:sma-2_sma-4_upregulated
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:hypodermis_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00042477:rsr-2(RNAi)_downregulated_RNAseq
WBPaper00044736:oscillating_dev_expression
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046887:WNT-target
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_4
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049954:BPA_upregulated
WBPaper00049979:S-astaxanthin_upregulated
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050743:elli-1(sam-3)_downregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:hypodermis_enriched
WBPaper00050990:hypodermis_expressed
WBPaper00051021:4-bromodiphenyl-ether_upregulated
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051265:F4_hrde-1(tm1200)_downregulated
WBPaper00051388:Glucose-diet_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055103:thoc-5(wy822)_downregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055648:vulva-uterus_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00059604:fluvastatin_downregulated_dlk-1(km12)
WBPaper00059604:fluvastatin_downregulated_N2
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
WBPaper00059735:glucose_upregulated_N2
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:AMso
WBPaper00061340:Seam_cell
WBPaper00061340:T
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:mlt-9_22518-F33D4.6_14044
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_downregulated
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062456:doxycycline_upregulated_N2_protein
WBPaper00062590:Aging_downregulated_neuron
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00065272:dhgd-1(tm6671)_upregulated
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065373:sek-1(km4)_downregulated_Ref
WBPaper00065841:30_1
WBPaper00065841:30_2
WBPaper00065841:33_0
WBPaper00065841:33_1
WBPaper00065841:38_1
WBPaper00065841:38_2
WBPaper00065841:82_1
WBPaper00065841:102_0
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00025032:cluster_24
WBPaper00025141:N2_Expressed_Genes
WBPaper00030985:Enterococcus_faecalis_upregulated
WBPaper00030985:Erwinia_carotovora_downregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:FedUp
WBPaper00033099:organophosphorus_pesticide_regulated
WBPaper00034739:N2lessDR1350
WBPaper00034757:up_by_oxidative_stress
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040963:TA300_up
WBPaper00041002:HQ_3d_2.0mM_Down
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00053827:pyoverdine_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
Interaction (198)
Map_infoMapIIPosition-1.44579Error0.014281
PositivePositive_cloneF56D1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027104
WBPaper00033099
WBPaper00038491
WBPaper00042257
WBPaper00055090
WBPaper00065106
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene