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WormBase Tree Display for Gene: WBGene00000967

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Name Class

WBGene00000967SMapS_parentSequenceT02E1
IdentityVersion2
NameCGC_namedhs-3Person_evidenceWBPerson651
Sequence_nameT02E1.5
Molecular_nameT02E1.5a
T02E1.5a.1
CE41004
T02E1.5b
CE41005
T02E1.5c
CE41006
T02E1.5b.1
T02E1.5c.1
Other_nameCELE_T02E1.5Accession_evidenceNDBBX284601
Public_namedhs-3
DB_infoDatabaseWormQTLgeneWBGene00000967
WormFluxgeneWBGene00000967
NDBlocus_tagCELE_T02E1.5
PanthergeneCAEEL|WormBase=WBGene00000967|UniProtKB=A5JYX5
familyPTHR24322
NCBIgene172603
RefSeqproteinNM_001129038.4
NM_001129037.4
NM_001129036.4
SwissProtUniProtAccA5JYX5
UniProt_GCRPUniProtAccA5JYX5
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:22WBPerson1971EventImportedInitial conversion from geneace
227 Apr 2007 10:07:20WBPerson1983EventAcquires_mergeWBGene00011377
Acquires_mergeWBGene00011377
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdhs
AlleleWBVar02127986
WBVar02127987
WBVar02127988
WBVar01499175
WBVar01499176
WBVar01574020
WBVar02150720
WBVar01500105
WBVar01499739
WBVar00653990
WBVar00653991
WBVar00653992
WBVar00653993
WBVar00653994
WBVar00653995
WBVar00653996
WBVar00653997
WBVar00653998
WBVar00653999
WBVar00654000
WBVar01957333
WBVar00654001
WBVar01914697
WBVar00654002
WBVar00654003
WBVar00654004
WBVar00654005
WBVar00654006
WBVar00299392
WBVar00654007
WBVar00654008
WBVar00654009
WBVar00654010
WBVar00654011
WBVar00654012
WBVar00654013
WBVar00654014
WBVar01420789
WBVar00654015
WBVar00654016
WBVar00654017
WBVar00654018
WBVar01420800
WBVar00654019
WBVar00654020
WBVar01911835
WBVar00654021
WBVar00654022
WBVar00654023
WBVar00654024
WBVar00654025
WBVar00654026
WBVar00654027
WBVar01499786
WBVar01499054
WBVar00277162
WBVar00339714
WBVar00339715
WBVar00339716
WBVar00339717
WBVar00339718
WBVar00339719
WBVar00339720
WBVar00339721
WBVar00339722
WBVar00339723
WBVar00339724
WBVar00339725
WBVar00339726
WBVar00154978
WBVar00093788
WBVar00154979
WBVar00154980
WBVar01474051
WBVar00094630
WBVar00094631
WBVar01498959
RNASeq_FPKM (74)
GO_annotation00004817
00004818
00004819
00004820
00004821
00004822
00004823
00004824
00004825
00004826
OrthologWBGene00057060Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00026879Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00150564Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00122000Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g10687Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6762Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2519Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g3682Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11227Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9768Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8968Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21204Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3072Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10836Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00177.g6283Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dhs-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17010Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00028.g1584Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22492Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000959Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g10430Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18536Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g2365Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10137110Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1536Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00210239Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00101158Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00106928Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00291758Trichuris murisFrom_analysisWormBase-Compara
WBGene00296581Trichuris murisFrom_analysisWormBase-Compara
WBGene00301657Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002272Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OMA
Panther
FB:FBgn0031630Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
FB:FBgn0032910Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
ZFIN:ZDB-GENE-030909-7Danio rerioFrom_analysisEnsEMBL-Compara
OMA
Panther
ZFIN:ZDB-GENE-040426-2049Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-2861Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-131127-122Danio rerioFrom_analysisEnsEMBL-Compara
OMA
Panther
ZFIN:ZDB-GENE-070112-2242Danio rerioFrom_analysisEnsEMBL-Compara
OMA
Panther
ZFIN:ZDB-GENE-041014-340Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:30311Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2668443Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2685269Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1565999Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1562060Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Paralog (38)
Structured_descriptionConcise_descriptiondhs-3 encodes a member of the short-chain dehydrogenases/reductases family (SDR) predicted to be mitochondrial.Paper_evidenceWBPaper00004424
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Involved in response to oxidative stress. Located in lipid droplet. Expressed in intestinal cell. Is an ortholog of human SDR16C5 (short chain dehydrogenase/reductase family 16C member 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST02E1.5a
T02E1.5b
T02E1.5c
Corresponding_CDS_historyT02E1.5:wp175
Corresponding_transcriptT02E1.5a.1
T02E1.5b.1
T02E1.5c.1
Other_sequence (79)
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00035060Inferred_automaticallyRNAi_primary
WBRNAi00004105Inferred_automaticallyRNAi_primary
WBRNAi00052211Inferred_automaticallyRNAi_primary
WBRNAi00116815Inferred_automaticallyRNAi_primary
WBRNAi00001281Inferred_automaticallyRNAi_primary
WBRNAi00052212Inferred_automaticallyRNAi_primary
WBRNAi00035059Inferred_automaticallyRNAi_primary
Expr_patternExpr12410
Expr14388
Expr16186
Expr16187
Expr1018894
Expr1030602
Expr1155843
Expr2010917
Expr2029156
Drives_constructWBCnstr00021891
WBCnstr00023090
WBCnstr00037172
Construct_productWBCnstr00020984
WBCnstr00021891
WBCnstr00022296
WBCnstr00023090
WBCnstr00037172
AntibodyWBAntibody00002328
Microarray_results (34)
Expression_cluster (243)
Interaction (120)
Map_infoMapIPosition2.659Error0.008209
PositivePositive_cloneT02E1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (22)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene