WormBase Tree Display for Gene: WBGene00000966
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| WBGene00000966 | SMap | S_parent | Sequence | F55A12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dhs-2 | Person_evidence | WBPerson651 | |||||
| Sequence_name | F55A12.4 | ||||||||
| Molecular_name | F55A12.4a | ||||||||
| F55A12.4a.1 | |||||||||
| CE26924 | |||||||||
| F55A12.4b | |||||||||
| CE51265 | |||||||||
| F55A12.4c | |||||||||
| CE11123 | |||||||||
| F55A12.4b.1 | |||||||||
| F55A12.4c.1 | |||||||||
| Other_name | CELE_F55A12.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | dhs-2 | ||||||||
| DB_info | Database | AceView | gene | 1F923 | |||||
| WormQTL | gene | WBGene00000966 | |||||||
| WormFlux | gene | WBGene00000966 | |||||||
| NDB | locus_tag | CELE_F55A12.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000966|UniProtKB=O01758 | |||||||
| family | PTHR43313 | ||||||||
| NCBI | gene | 172183 | |||||||
| RefSeq | protein | NM_001392303.1 | |||||||
| NM_059174.9 | |||||||||
| NM_001322672.3 | |||||||||
| TrEMBL | UniProtAcc | H2KYZ9 | |||||||
| O01758 | |||||||||
| Q86NJ7 | |||||||||
| UniProt_GCRP | UniProtAcc | O01758 | |||||||
| OMIM | gene | 601617 | |||||||
| 609769 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dhs | ||||||||
| Allele (41) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022005 | ||||||||
| 00022006 | |||||||||
| 00022007 | |||||||||
| 00022008 | |||||||||
| 00025475 | |||||||||
| Ortholog (46) | |||||||||
| Paralog (38) | |||||||||
| Structured_description | Concise_description | dhs-2 encodes a short-chain dehydrogenase predicted to be mitochondrial. | Paper_evidence | WBPaper00004424 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable oxidoreductase activity. Predicted to be involved in steroid metabolic process. Predicted to be located in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 13; fundus albipunctatus; and night blindness. Is an ortholog of several human genes including HSD17B6 (hydroxysteroid 17-beta dehydrogenase 6); RDH16 (retinol dehydrogenase 16); and RDH5 (retinol dehydrogenase 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080257 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29958) | ||||
| DOID:11105 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9940) | ||||||
| DOID:8499 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9940) | ||||||
| Molecular_info | Corresponding_CDS | F55A12.4a | |||||||
| F55A12.4b | |||||||||
| F55A12.4c | |||||||||
| Corresponding_CDS_history | F55A12.4b:wp252 | ||||||||
| Corresponding_transcript | F55A12.4a.1 | ||||||||
| F55A12.4b.1 | |||||||||
| F55A12.4c.1 | |||||||||
| Other_sequence | CRC07315_1 | ||||||||
| CJC05535_1 | |||||||||
| Associated_feature | WBsf643287 | ||||||||
| WBsf643288 | |||||||||
| WBsf643289 | |||||||||
| WBsf656310 | |||||||||
| WBsf983664 | |||||||||
| WBsf983665 | |||||||||
| WBsf1009808 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032838 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002223 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003774 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114793 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048419 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011247 | ||||||||
| Expr1030601 | |||||||||
| Expr1152208 | |||||||||
| Expr2010914 | |||||||||
| Expr2029153 | |||||||||
| Drives_construct | WBCnstr00037173 | ||||||||
| Construct_product | WBCnstr00037173 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (258) | |||||||||
| Interaction | WBInteraction000111313 | ||||||||
| WBInteraction000115773 | |||||||||
| WBInteraction000115795 | |||||||||
| WBInteraction000115845 | |||||||||
| WBInteraction000123134 | |||||||||
| WBInteraction000136648 | |||||||||
| WBInteraction000139411 | |||||||||
| WBInteraction000145222 | |||||||||
| WBInteraction000175148 | |||||||||
| WBInteraction000177540 | |||||||||
| WBInteraction000193696 | |||||||||
| WBInteraction000198298 | |||||||||
| WBInteraction000200651 | |||||||||
| WBInteraction000204454 | |||||||||
| WBInteraction000229529 | |||||||||
| WBInteraction000248247 | |||||||||
| WBInteraction000257774 | |||||||||
| WBInteraction000272685 | |||||||||
| WBInteraction000272908 | |||||||||
| WBInteraction000277143 | |||||||||
| WBInteraction000278239 | |||||||||
| WBInteraction000296899 | |||||||||
| WBInteraction000303070 | |||||||||
| WBInteraction000310309 | |||||||||
| WBInteraction000315229 | |||||||||
| WBInteraction000315317 | |||||||||
| WBInteraction000321778 | |||||||||
| WBInteraction000322026 | |||||||||
| WBInteraction000323456 | |||||||||
| WBInteraction000326811 | |||||||||
| WBInteraction000336426 | |||||||||
| WBInteraction000342546 | |||||||||
| WBInteraction000345203 | |||||||||
| WBInteraction000350469 | |||||||||
| WBInteraction000355918 | |||||||||
| WBInteraction000356103 | |||||||||
| WBInteraction000357772 | |||||||||
| WBInteraction000368181 | |||||||||
| WBInteraction000369118 | |||||||||
| WBInteraction000374280 | |||||||||
| WBInteraction000388629 | |||||||||
| WBInteraction000395263 | |||||||||
| WBInteraction000400473 | |||||||||
| WBInteraction000402879 | |||||||||
| WBInteraction000424458 | |||||||||
| WBInteraction000432591 | |||||||||
| WBInteraction000435563 | |||||||||
| WBInteraction000435642 | |||||||||
| WBInteraction000438553 | |||||||||
| WBInteraction000438965 | |||||||||
| WBInteraction000440054 | |||||||||
| WBInteraction000441646 | |||||||||
| WBInteraction000441655 | |||||||||
| WBInteraction000447161 | |||||||||
| WBInteraction000453474 | |||||||||
| WBInteraction000453814 | |||||||||
| WBInteraction000458590 | |||||||||
| WBInteraction000475331 | |||||||||
| WBInteraction000504573 | |||||||||
| Map_info | Map | I | Position | -0.057235 | Error | 0.008171 | |||
| Positive | Positive_clone | F55A12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029387 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00045631 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059839 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
