WormBase Tree Display for Gene: WBGene00000787
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WBGene00000787 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C41D11 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | cps-6 | Person_evidence | WBPerson1606 | |||||
Sequence_name | C41D11.8 | ||||||||
Molecular_name | C41D11.8 | ||||||||
C41D11.8.1 | |||||||||
CE29488 | |||||||||
Other_name | CELE_C41D11.8 | Accession_evidence | NDB | BX284601 | |||||
Public_name | cps-6 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cps | ||||||||
Allele (33) | |||||||||
Legacy_information | Recessive mutation sm116 weakly suppresses neuronal cell deaths and enhances suppression by ced-8(n1891). Encodes mitochondrial endonuclease G. | ||||||||
Strain | WBStrain00036451 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (34) | |||||||||
Contained_in_operon | CEOP1180 | ||||||||
Ortholog | WBGene00026754 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00152502 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00109742 | Pristionchus pacificus | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WBGene00191318 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00130771 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00076271 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00222958 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g9422 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g10444 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g18213 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g3724 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g11126 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g7195 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g8114 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g21062 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP40.g17051 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00908.g14879 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-cps-6 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold630.g17108 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00542.g12617 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_10436 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_003183 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g11308 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Pan_g11581 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_10283000 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
WBGene00130857 | Caenorhabditis japonica | From_analysis | WormBase-Compara | ||||||
WBGene00083890 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
WBGene00238860 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00258636 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
SGD:S000003744 | Saccharomyces cerevisiae | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
FB:FBgn0033690 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
SonicParanoid | |||||||||
FB:FBgn0052463 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
Panther | |||||||||
PhylomeDB | |||||||||
ZFIN:ZDB-GENE-050522-402 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
SonicParanoid | |||||||||
HGNC:3346 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
SonicParanoid | |||||||||
MGI:1261433 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
SonicParanoid | |||||||||
RGD:1310763 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
SonicParanoid | |||||||||
Structured_description | Concise_description | cps-6 encodes an ortholog of human mitochondrial endonuclease G (EndoG) that promotes apoptosis, and is required to degrade nicked (TUNEL-positive) DNA in apoptotic cells; transgenic CPS-6 is localized to mitochondria, but transgenic CPS-6 lacking a mitochondrial localization sequence is found in nuclei, and nuclei may be the in vivo target of CPS-6 after its activation by CED-3; CPS-6 has magnesium-dependent nuclease activity in vitro and can degrade both single- and double-stranded DNA, as well as single-stranded RNA; CPS-6 also preferentially binds G-tract DNA in vitro; cps-6(sm116) and cps-6(RNAi) animals have delayed CED-3-induced apoptosis, and cps-6(sm116) suppresses a constitutively active ced-3 transgene; cps-6(sm116) can be transgenically rescued by mouse EndoG; CPS-6 binds WAH-1 (an apoptosis-inducing factor ortholog) in vitro, WAH-1 binding enhances CPS-6's endonuclease activity, and constitutive transgenic coexpression of cps-6 with wah-1 induces cell death not seen with constitutive expression of either cps-6 or wah-1 alone; CPS-6 binds CRN-1 (a flap endonuclease ortholog) in vitro, and may form a large complex in vivo with CRN-1, CRN-4, CRN-5, CYP-13, and WAH-1; CRN-1 enhances CPS-6's endonuclease activity in vitro, CPS-6 enhances CRN-1's gap-dependent endonuclease and 5'-3' exonuclease activities, and cps-6 is required for excess cell deaths induced by a crn-1 transgene. | Paper_evidence | WBPaper00004743 | |||||
WBPaper00005558 | |||||||||
WBPaper00005857 | |||||||||
WBPaper00005978 | |||||||||
WBPaper00028402 | |||||||||
WBPaper00040583 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Feb 2012 00:00:00 | ||||||||
Automated_description | Enables endonuclease activity; protein homodimerization activity; and sequence-specific DNA binding activity. Involved in RNA catabolic process and apoptotic DNA fragmentation. Located in mitochondrion. Is an ortholog of human ENDOG (endonuclease G). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C41D11.8 | |||||||
Corresponding_transcript | C41D11.8.1 | ||||||||
Other_sequence (38) | |||||||||
Associated_feature | WBsf219272 | ||||||||
Experimental_info | RNAi_result | WBRNAi00005011 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00087543 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097790 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097791 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042291 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097793 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097792 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1493 | ||||||||
Expr1015388 | |||||||||
Expr1030488 | |||||||||
Expr1146282 | |||||||||
Expr2010509 | |||||||||
Expr2028749 | |||||||||
Construct_product | WBCnstr00010306 | ||||||||
Antibody | WBAntibody00002303 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (138) | |||||||||
Interaction (109) | |||||||||
WBProcess | WBbiopr:00000014 | ||||||||
WBbiopr:00000103 | |||||||||
WBbiopr:00000106 | |||||||||
Map_info | Map | I | Position | -1.30373 | Error | 0.003427 | |||
Well_ordered | |||||||||
Positive | Positive_clone | C41D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4020 | |||||||
4021 | |||||||||
Reference (25) | |||||||||
Remark | Data extracted from Parrish et al (2001) | ||||||||
Sequence connection updated to C41D11.8 based on email from Jean & Danielle and John Spieth (citing GenBank AF390558) | |||||||||
Method | Gene |