WormBase Tree Display for Gene: WBGene00000729
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| WBGene00000729 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | F57B7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-156 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F57B7.3 | ||||||||
| Molecular_name | F57B7.3 | ||||||||
| F57B7.3.1 | |||||||||
| CE05991 | |||||||||
| Other_name | CELE_F57B7.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | col-156 | ||||||||
| DB_info | Database | AceView | gene | 5L930 | |||||
| WormQTL | gene | WBGene00000729 | |||||||
| WormFlux | gene | WBGene00000729 | |||||||
| NDB | locus_tag | CELE_F57B7.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000729|UniProtKB=Q20927 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 186439 | |||||||
| RefSeq | protein | NM_073501.8 | |||||||
| TREEFAM | TREEFAM_ID | TF316783 | |||||||
| TrEMBL | UniProtAcc | Q20927 | |||||||
| UniProt_GCRP | UniProtAcc | Q20927 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00050975 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069580 | ||||||||
| 00069581 | |||||||||
| 00107717 | |||||||||
| Ortholog (49) | |||||||||
| Paralog (170) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57B7.3 | |||||||
| Corresponding_transcript | F57B7.3.1 | ||||||||
| Other_sequence (107) | |||||||||
| Associated_feature | WBsf1001355 | ||||||||
| WBsf234535 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015875 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033016 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048829 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027365 | ||||||||
| Expr1030443 | |||||||||
| Expr1152584 | |||||||||
| Expr2010351 | |||||||||
| Expr2028594 | |||||||||
| Drives_construct | WBCnstr00037329 | ||||||||
| Construct_product | WBCnstr00037329 | ||||||||
| Microarray_results | SMD_F57B7.3 | ||||||||
| SMD_F57B7.3:2 | |||||||||
| 188312_at | |||||||||
| A_12_P115610 | |||||||||
| Aff_F57B7.3 | |||||||||
| GPL13394_WBGene00000729 | |||||||||
| GPL13914_F57B7.3 | |||||||||
| GPL14144_F57B7.3_149-208_0.914_3_B | |||||||||
| GPL14144_F57B7.3_227-286_0.893_8_C | |||||||||
| GPL14144_F57B7.3_535-594_0.927_1_A | |||||||||
| GPL19516_CGZ0024912 | |||||||||
| GPL21109_F57B7.3 | |||||||||
| GPL3518_CE05991 | |||||||||
| GPL8304_CE_WBGene00000729_A | |||||||||
| GPL8673_F57B7_3P00001 | |||||||||
| GPL8673_F57B7_3P00077 | |||||||||
| GPL8673_F57B7_3P00145 | |||||||||
| GPL9450_F57B7.3 | |||||||||
| cea2.i.40086 | |||||||||
| Expression_cluster (235) | |||||||||
| Interaction (163) | |||||||||
| Map_info | Map | V | Position | 3.11339 | Error | 0.002807 | |||
| Positive | Positive_clone | F57B7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065859 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
