WormBase Tree Display for Gene: WBGene00000719

WBGene00000719 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: T06E4
  Identity: Version: 1
    Name: CGC_name: col-146 Person_evidence: WBPerson345
      Sequence_name: T06E4.6
      Molecular_name: T06E4.6
        T06E4.6.1
        CE06372
      Other_name: CELE_T06E4.6 Accession_evidence: NDB BX284605
      Public_name: col-146
    DB_info: Database: AceView gene 5K109
        WormQTL gene WBGene00000719
        WormFlux gene WBGene00000719
        NDB locus_tag CELE_T06E4.6
        Panther gene CAEEL|WormBase=WBGene00000719|UniProtKB=Q22260
          family PTHR24637
        NCBI gene 188178
        RefSeq protein NM_073083.8
        TREEFAM TREEFAM_ID TF316783
        TrEMBL UniProtAcc Q22260
        UniProt_GCRP UniProtAcc Q22260
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (20)
    RNASeq_FPKM (74)
    GO_annotation: 00074734
      00074735
      00074736
      00107707
    Ortholog: WBGene00066854 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00038571 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00038572 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00159318 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124487 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00066855 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00142175 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00122617 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00129584 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00228353 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2022 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11504 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g501 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4788 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g4789 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g7462 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP31.g25457 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15584 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g27674 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23810 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01495.g16472 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13076.g24062 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g20261 Caenorhabditis nigoni From_analysis: WormBase-Compara
      FL83_16317 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017002 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g5584 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50251200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_50251900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15296 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237999 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00105584 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00288383 Trichuris muris From_analysis: WormBase-Compara
    Paralog (170)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T06E4.6
    Corresponding_transcript: T06E4.6.1
    Other_sequence (31)
    Associated_feature: WBsf647097
      WBsf979015
      WBsf232277
  Experimental_info: RNAi_result: WBRNAi00115938 Inferred_automatically: RNAi_primary
      WBRNAi00052657 Inferred_automatically: RNAi_primary
      WBRNAi00062960 Inferred_automatically: RNAi_primary
      WBRNAi00062958 Inferred_automatically: RNAi_primary
      WBRNAi00052655 Inferred_automatically: RNAi_primary
      WBRNAi00018301 Inferred_automatically: RNAi_primary
      WBRNAi00035271 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1030436
      Expr1156263
      Expr2010340
      Expr2028583
    Drives_construct: WBCnstr00037339
    Construct_product: WBCnstr00037339
    Microarray_results (26)
    Expression_cluster (320)
    Interaction (57)
  Map_info: Map: V Position: 2.05728 Error: 0.000418
    Positive: Positive_clone: T06E4 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025192
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene