WormBase Tree Display for Gene: WBGene00000697
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WBGene00000697 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | W08D2 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-123 | Person_evidence | WBPerson345 | |||||
Sequence_name | W08D2.6 | ||||||||
Molecular_name | W08D2.6 | ||||||||
W08D2.6.1 | |||||||||
CE26027 | |||||||||
Other_name | CELE_W08D2.6 | Accession_evidence | NDB | BX284604 | |||||
Public_name | col-123 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (23) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00077658 | ||||||||
00077659 | |||||||||
00107689 | |||||||||
Ortholog (38) | |||||||||
Paralog (162) | |||||||||
Structured_description | Concise_description | col-123 is homologous to the human gene A TYPE IV COLLAGEN (COL6A1; OMIM:303631), which when mutated is sometimes associated with diffuse leiomyomatosis. | Curator_confirmed | WBPerson1823 | |||||
WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in Bethlem myopathy; Ullrich congenital muscular dystrophy; and congenital myasthenic syndrome 5. Is an ortholog of human COL6A2 (collagen type VI alpha 2 chain) and COLQ (collagen like tail subunit of asymmetric acetylcholinesterase). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0110667 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2226) | ||||
DOID:0050663 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2212) | ||||||
DOID:0050558 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2212) | ||||||
Molecular_info | Corresponding_CDS | W08D2.6 | |||||||
Corresponding_CDS_history | W08D2.6:wp270 | ||||||||
Corresponding_transcript | W08D2.6.1 | ||||||||
Other_sequence (8) | |||||||||
Associated_feature | WBsf228879 | ||||||||
WBsf228880 | |||||||||
Experimental_info | RNAi_result | WBRNAi00054976 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00036374 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007485 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036373 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054977 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020184 | ||||||||
Expr1030418 | |||||||||
Expr1158511 | |||||||||
Drives_construct | WBCnstr00037359 | ||||||||
Construct_product | WBCnstr00037359 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (86) | |||||||||
Map_info | Map | IV | Position | 4.42702 | Error | 0.000843 | |||
Positive | Positive_clone | W08D2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00061667 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |