WormBase Tree Display for Gene: WBGene00000693
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WBGene00000693 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | C53B4 | ||||||
Identity | Version | 1 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 4J744 | |||||
WormQTL | gene | WBGene00000693 | |||||||
WormFlux | gene | WBGene00000693 | |||||||
NDB | locus_tag | CELE_C53B4.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000693|UniProtKB=Q18799 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 177715 | |||||||
RefSeq | protein | NM_069160.6 | |||||||
TrEMBL | UniProtAcc | Q18799 | |||||||
UniProt_GCRP | UniProtAcc | Q18799 | |||||||
OMIM | gene | 120090 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (23) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00062326 | ||||||||
00062327 | |||||||||
00062328 | |||||||||
00107685 | |||||||||
Ortholog (28) | |||||||||
Paralog (163) | |||||||||
Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in artery disease (multiple); brain small vessel disease 2; and porencephaly. Is an ortholog of human COL4A2 (collagen type IV alpha 2 chain). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0112314 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||
DOID:0060263 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
DOID:13223 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
DOID:13129 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
DOID:1936 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2203) | ||||||
Molecular_info | Corresponding_CDS | C53B4.5 | |||||||
Corresponding_transcript | C53B4.5.1 | ||||||||
Other_sequence (258) | |||||||||
Associated_feature | WBsf230494 | ||||||||
WBsf230495 | |||||||||
Experimental_info | RNAi_result (13) | ||||||||
Expr_pattern | Expr1015422 | ||||||||
Expr1030414 | |||||||||
Expr1147036 | |||||||||
Expr2010316 | |||||||||
Expr2028560 | |||||||||
Drives_construct | WBCnstr00037363 | ||||||||
Construct_product | WBCnstr00037363 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (249) | |||||||||
Interaction (84) | |||||||||
Map_info | Map | IV | Position | 3.99997 | Error | 4.9e-05 | |||
Positive | Positive_clone | C53B4 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00025088 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00056839 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |