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WormBase Tree Display for Gene: WBGene00000693

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Name Class

WBGene00000693EvidencePerson_evidenceWBPerson345
WBPerson651
SMapS_parentSequenceC53B4
IdentityVersion1
NameCGC_namecol-119Person_evidenceWBPerson345
Sequence_nameC53B4.5
Molecular_nameC53B4.5
C53B4.5.1
CE03091
Other_nameCELE_C53B4.5Accession_evidenceNDBBX284604
Public_namecol-119
DB_infoDatabaseAceViewgene4J744
WormQTLgeneWBGene00000693
WormFluxgeneWBGene00000693
NDBlocus_tagCELE_C53B4.5
PanthergeneCAEEL|WormBase=WBGene00000693|UniProtKB=Q18799
familyPTHR24637
NCBIgene177715
RefSeqproteinNM_069160.6
TrEMBLUniProtAccQ18799
UniProt_GCRPUniProtAccQ18799
OMIMgene120090
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (23)
RNASeq_FPKM (74)
GO_annotation00062326
00062327
00062328
00107685
Ortholog (28)
Paralog (163)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in artery disease (multiple); brain small vessel disease 2; and porencephaly. Is an ortholog of human COL4A2 (collagen type IV alpha 2 chain).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0112314Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2203)
DOID:0060263Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2203)
DOID:13223Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2203)
DOID:13129Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2203)
DOID:1936Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2203)
Molecular_infoCorresponding_CDSC53B4.5
Corresponding_transcriptC53B4.5.1
Other_sequenceEX909966.1
Oden_isotig15061
HCC00345_1
AM744239.1
FG973356.1
FG973159.1
HC05617
Oden_isotig20988
FF678735.1
EV854246.1
FK802318.1
ES744562.1
AAC00064_1
HC05745
JI179546.1
EX015154.1
DIC00907_1
FK807249.1
FG977978.1
FK805237.1
CJC17803_1
AI130554.1
SSC03566_1
HC05416
XIC01939_1
EX012157.1
AM744309.1
FK809412.1
FK803117.1
MI06473
DN190150.1
OOC00760_1
EX910004.1
HC03225
ES742541.1
ES414264.1
Tcol_isotig10619
ES412863.1
FG980483.1
OVC03996_1
ES412588.1
PPC01175_1
EX012790.1
FK807339.1
WBC01407_1
AAC00241_1
EX911636.1
CJC07960_1
FG978838.1
CK855470.1
CGC01020_1
FG978557.1
DI01373
EX913203.1
DN191204.1
AA293996.1
CK854956.1
Oden_isotig16125
FK802964.1
BM01306
DN190190.1
AS02273
AM744088.1
HCC07419_1
Dviv_isotig24112
CK726278.1
HC02280
EX913731.1
OOC00220_1
ES410471.1
N21793.1
TCC00645_1
TDC02371_2
CK726182.1
HC02086
BE029058.1
EX910695.1
FK803344.1
BMC09088_1
CK726412.1
AS08394
ASC00095_1
FK809637.1
PP00582
ASC00095_2
FK808899.1
CJC01549_3
EX916015.1
JI175208.1
CK854913.1
SS01585
EX013159.1
DN190845.1
AM744724.1
FK802478.1
EX007825.1
NAC00381_1
AW313033.1
EX013689.1
BUC02310_1
FG972688.1
SSC03119_1
AI130135.1
AM744472.1
PP00577
AF035657.1
FF682111.1
ES739615.1
MIC05453_1
CK850781.1
FM207686.1
EX915372.1
EX914718.1
FG975008.1
EX541761.1
CB036295.1
FG975000.1
CGC00752_1
AM744341.1
EX913257.1
CK855351.1
JI180243.1
HC03267
R86369.1
EX912583.1
FF678103.1
ES412781.1
FG978863.1
FK803408.1
Hbac_isotig02643
FK805416.1
AAC00238_1
EV853688.1
FK808248.1
FK800818.1
HBC06807_1
OOC03936_1
JI169175.1
FK804061.1
FK806873.1
EX560011.1
Name_isotig05874
SS00856
EV853196.1
FK808015.1
OVC04226_1
EX011006.1
HBC14438_1
HC04089
CR08945
AA701699.1
CRC04647_1
EX009588.1
CK855345.1
AW755260.1
EX013001.1
FG973615.1
EX014845.1
BG467597.1
FK800364.1
ES741011.1
FK808233.1
FG979808.1
CR02438
FK802365.1
EX014873.1
AS03112
BMC05172_1
EX008890.1
EX910527.1
AI066933.1
OVC00103_1
DN190868.1
FG975237.1
HC02762
SS01593
HBC00032_2
FG976815.1
FK803762.1
FG971213.1
AM744043.1
FK808328.1
TDC00864_1
CB037826.1
EX007908.1
FF680010.1
FK807787.1
FG979941.1
AW308585.1
BF918279.1
FC818139.1
FK806815.1
EX547393.1
Tcol_isotig10620
FK803035.1
CK854812.1
FK804287.1
CJC01549_2
AYC00112_1
CK726271.1
FG975540.1
ES740140.1
PPC00468_1
FF679286.1
ES740144.1
FG980586.1
BG468005.1
CJC06814_1
FG971826.1
FG975169.1
FK808315.1
TDC02371_1
FK805128.1
JG463659.1
MI07853
AM744766.1
FF679370.1
JO467665.1
EX014072.1
FF679472.1
CJC10233_1
EX011448.1
TCC01430_1
DN190219.1
JI224018.1
JI472688.1
FK808438.1
BM00074
Oden_isotig20997
BMC05172_2
FK803389.1
FG974815.1
EX913582.1
FF681802.1
FK804888.1
FK805510.1
FK805355.1
FF681977.1
CRC10811_1
AA670517.1
BG468060.1
FK809713.1
PPC01347_1
AE01054
FG976553.1
FK806636.1
CBC01340_1
FG976476.1
CK850495.1
TX00542
TDC02827_1
FK803530.1
BMC12490_1
AM744434.1
EV853274.1
CK855146.1
FG973835.1
EX915118.1
Associated_featureWBsf230494
WBsf230495
Experimental_infoRNAi_result (13)
Expr_patternExpr1015422
Expr1030414
Expr1147036
Expr2010316
Expr2028560
Drives_constructWBCnstr00037363
Construct_productWBCnstr00037363
Microarray_results (18)
Expression_cluster (249)
Interaction (84)
Map_infoMapIVPosition3.99997Error4.9e-05
PositivePositive_cloneC53B4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00025088
WBPaper00038491
WBPaper00055090
WBPaper00056839
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene