WormBase Tree Display for Gene: WBGene00000664

WBGene00000664 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F17C8
  Identity: Version: 1
    Name: CGC_name: col-89 Person_evidence: WBPerson345
      Sequence_name: F17C8.2
      Molecular_name: F17C8.2
        F17C8.2.1
        CE00956
      Other_name: CELE_F17C8.2 Accession_evidence: NDB BX284603
      Public_name: col-89
    DB_info: Database: AceView gene 3F837
        WormQTL gene WBGene00000664
        WormFlux gene WBGene00000664
        NDB locus_tag CELE_F17C8.2
        Panther gene CAEEL|WormBase=WBGene00000664|UniProtKB=Q19528
          family PTHR24637
        NCBI gene 175627
        RefSeq protein NM_065574.4
        TREEFAM TREEFAM_ID TF316783
        TrEMBL UniProtAcc Q19528
        UniProt_GCRP UniProtAcc Q19528
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (18)
    Strain: WBStrain00002199
      WBStrain00002200
      WBStrain00002326
    RNASeq_FPKM (74)
    GO_annotation: 00065006
      00065007
      00105685
      00107659
    Ortholog: WBGene00093063 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00061713 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037494 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142355 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00121377 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g5968 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10086 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1596 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20412 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23333 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20286 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12894 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18590 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g28187 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1243 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00712.g13620 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_11323.g23172 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-col-89 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold478.g1797 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00221.g7371 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_22466 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010036 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06001 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06250 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13718 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g23762 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30064800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7530 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241706 Onchocerca volvulus From_analysis: WormBase-Compara
    Paralog (39)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Involved in IRE1-mediated unfolded protein response. Predicted to be part of collagen trimer. Expressed in head; neurons; and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F17C8.2
    Corresponding_transcript: F17C8.2.1
    Other_sequence (273)
    Associated_feature: WBsf645120
      WBsf992206
      WBsf224791
      WBsf224792
  Experimental_info: RNAi_result: WBRNAi00005077 Inferred_automatically: RNAi_primary
      WBRNAi00013464 Inferred_automatically: RNAi_primary
      WBRNAi00044883 Inferred_automatically: RNAi_primary
      WBRNAi00031072 Inferred_automatically: RNAi_primary
      WBRNAi00006864 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram335
      Chronogram1774
      Expr5782
      Expr5783
      Expr12109
      Expr1019190
      Expr1030391
      Expr1148849
      Expr2010435
      Expr2028675
    Drives_construct: WBCnstr00002942
      WBCnstr00002943
      WBCnstr00004466
      WBCnstr00037387
    Construct_product: WBCnstr00037387
    Microarray_results (18)
    Expression_cluster (234)
    Interaction (21)
  Map_info: Map: III Position: -2.60226 Error: 0.00352
    Positive: Positive_clone: F17C8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene