WormBase Tree Display for Gene: WBGene00000663

WBGene00000663 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: W05G11
  Identity: Version: 1
    Name: CGC_name: col-88 Person_evidence: WBPerson345
      Sequence_name: W05G11.3
      Molecular_name: W05G11.3
        W05G11.3.1
        CE14628
      Other_name: CELE_W05G11.3 Accession_evidence: NDB BX284603
      Public_name: col-88
    DB_info: Database: AceView gene 3A659
        WormQTL gene WBGene00000663
        WormFlux gene WBGene00000663
        NDB locus_tag CELE_W05G11.3
        Panther gene CAEEL|WormBase=WBGene00000663|UniProtKB=O44904
          family PTHR24637
        NCBI gene 175170
        RefSeq protein NM_064730.5
        TREEFAM TREEFAM_ID TF316783
        TrEMBL UniProtAcc O44904
        UniProt_GCRP UniProtAcc O44904
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (65)
    Strain: WBStrain00050965
    RNASeq_FPKM (74)
    GO_annotation: 00033572
      00033573
      00033574
      00107658
    Ortholog: WBGene00035545 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00065398 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153505 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00107748 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00105778 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00094278 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00107697 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00228353 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5762 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g5847 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3186 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16811 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12981 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22414 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20937 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12047 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g7663 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g9790 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-col-88 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20300 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01128.g18608 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_011761 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02480 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5584 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30318200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g6692 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237999 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288383 Trichuris muris From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-030131-3430 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
      ZFIN:ZDB-GENE-110411-119 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
    Paralog (162)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W05G11.3
    Corresponding_transcript: W05G11.3.1
    Other_sequence: CR12079
    Associated_feature: WBsf990964
      WBsf990965
      WBsf1013993
      WBsf1013994
      WBsf224327
  Experimental_info: RNAi_result: WBRNAi00080669 Inferred_automatically: RNAi_primary
      WBRNAi00006604 Inferred_automatically: RNAi_primary
      WBRNAi00007319 Inferred_automatically: RNAi_primary
      WBRNAi00054833 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027367
      Expr1030390
      Expr1158376
      Expr2010434
      Expr2028674
    Drives_construct: WBCnstr00037388
    Construct_product: WBCnstr00037388
    Microarray_results (19)
    Expression_cluster (241)
    Interaction (109)
  Map_info: Map: III Position: -27.1833
    Positive: Positive_clone: W05G11 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032236
    WBPaper00038491
    WBPaper00055090
    WBPaper00065859
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene