WormBase Tree Display for Gene: WBGene00000656

WBGene00000656 Evidence: Person_evidence (2)
  SMap: S_parent: Sequence: C09G5
  Identity: Version: 1
    Name: CGC_name: col-80 Person_evidence: WBPerson345
      Sequence_name: C09G5.5
      Molecular_name: C09G5.5
        C09G5.5.1
        CE01485
      Other_name: CELE_C09G5.5 Accession_evidence: NDB BX284602
      Public_name: col-80
    DB_info: Database: AceView gene 2K997
        WormQTL gene WBGene00000656
        WormFlux gene WBGene00000656
        NDB locus_tag CELE_C09G5.5
        Panther gene CAEEL|WormBase=WBGene00000656|UniProtKB=Q09456
          family PTHR24637
        NCBI gene 174652
        RefSeq protein NM_063909.9
        SwissProt UniProtAcc Q09456
        TREEFAM TREEFAM_ID TF316783
        UniProt_GCRP UniProtAcc Q09456
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (20)
    RNASeq_FPKM (74)
    GO_annotation: 00053979
      00053980
      00053981
      00107652
    Ortholog: WBGene00025972 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
      WBGene00128444 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00271761 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00233145 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6937 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5323 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g6831 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP28.g12302 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9158 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g15582 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g12987 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g17353 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Csp11.Scaffold618.g6088 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14411 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14417 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_30233100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5797 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246166 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00090321 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00090372 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00092283 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00092285 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00105663 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00107748 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00205753 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00271999 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272184 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00274166 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00278433 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00279747 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00281490 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00281529 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00262350 Strongyloides ratti From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-030131-3430 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
      ZFIN:ZDB-GENE-110411-119 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
      HGNC:17025 Homo sapiens From_analysis: EnsEMBL-Compara
            PhylomeDB
    Paralog (170)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is an ortholog of human COL21A1 (collagen type XXI alpha 1 chain). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9975 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17025)
  Molecular_info: Corresponding_CDS: C09G5.5
    Corresponding_transcript: C09G5.5.1
    Other_sequence (85)
    Associated_feature: WBsf222053
  Experimental_info: RNAi_result: WBRNAi00010550 Inferred_automatically: RNAi_primary
      WBRNAi00028740 Inferred_automatically: RNAi_primary
      WBRNAi00114419 Inferred_automatically: RNAi_primary
      WBRNAi00028737 Inferred_automatically: RNAi_primary
      WBRNAi00072831 Inferred_automatically: RNAi_primary
      WBRNAi00072830 Inferred_automatically: RNAi_primary
      WBRNAi00040237 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020665
      Expr1030386
      Expr1144309
      Expr2010427
      Expr2028667
    Drives_construct: WBCnstr00037394
    Construct_product: WBCnstr00037394
    Microarray_results (18)
    Expression_cluster (309)
    Interaction (87)
  Map_info: Map: II Position: 3.12398 Error: 3.5e-05
    Positive: Positive_clone: C09G5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00063976
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene