WormBase Tree Display for Gene: WBGene00000656
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| WBGene00000656 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | C09G5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-80 | Person_evidence | WBPerson345 | |||||
| Sequence_name | C09G5.5 | ||||||||
| Molecular_name | C09G5.5 | ||||||||
| C09G5.5.1 | |||||||||
| CE01485 | |||||||||
| Other_name | CELE_C09G5.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-80 | ||||||||
| DB_info | Database | AceView | gene | 2K997 | |||||
| WormQTL | gene | WBGene00000656 | |||||||
| WormFlux | gene | WBGene00000656 | |||||||
| NDB | locus_tag | CELE_C09G5.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000656|UniProtKB=Q09456 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 174652 | |||||||
| RefSeq | protein | NM_063909.9 | |||||||
| SwissProt | UniProtAcc | Q09456 | |||||||
| TREEFAM | TREEFAM_ID | TF316783 | |||||||
| UniProt_GCRP | UniProtAcc | Q09456 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (20) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00053979 | ||||||||
| 00053980 | |||||||||
| 00053981 | |||||||||
| 00107652 | |||||||||
| Ortholog (36) | |||||||||
| Paralog (170) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is an ortholog of human COL21A1 (collagen type XXI alpha 1 chain). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9975 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17025) | ||||
| Molecular_info | Corresponding_CDS | C09G5.5 | |||||||
| Corresponding_transcript | C09G5.5.1 | ||||||||
| Other_sequence | EW744711.1 | ||||||||
| AAC00367_1 | |||||||||
| LSC01156_1 | |||||||||
| XI05289 | |||||||||
| FD515272.1 | |||||||||
| OOC00787_1 | |||||||||
| CSC01464_1 | |||||||||
| EX534998.1 | |||||||||
| GPC03245_1 | |||||||||
| HC02368 | |||||||||
| DN191010.1 | |||||||||
| CSC01713_1 | |||||||||
| PPC00244_2 | |||||||||
| ACC06716_1 | |||||||||
| TX00572 | |||||||||
| PPC15728_1 | |||||||||
| ASC00188_1 | |||||||||
| XIC03441_1 | |||||||||
| DN190656.1 | |||||||||
| DN190914.1 | |||||||||
| FC818287.1 | |||||||||
| PP00546 | |||||||||
| Oden_isotig06940 | |||||||||
| CBC02185_3 | |||||||||
| CK850687.1 | |||||||||
| TCC00774_1 | |||||||||
| BXC00413_1 | |||||||||
| AS01400 | |||||||||
| CK855287.1 | |||||||||
| XIC03510_1 | |||||||||
| EW744705.1 | |||||||||
| DN190271.1 | |||||||||
| MIC06847_1 | |||||||||
| EX537074.1 | |||||||||
| DN191155.1 | |||||||||
| JI170083.1 | |||||||||
| Z24734.1 | |||||||||
| FD513978.1 | |||||||||
| AF006727.1 | |||||||||
| DN190350.1 | |||||||||
| TCC02529_1 | |||||||||
| CBC02185_1 | |||||||||
| DN190832.1 | |||||||||
| XI02786 | |||||||||
| HCC00360_1 | |||||||||
| TSC04289_1 | |||||||||
| EW744293.1 | |||||||||
| TCC00782_1 | |||||||||
| CJC06085_1 | |||||||||
| BMC06846_1 | |||||||||
| Name_isotig05150 | |||||||||
| JI175364.1 | |||||||||
| PPC03833_2 | |||||||||
| TX00287 | |||||||||
| HC05493 | |||||||||
| JO467766.1 | |||||||||
| WBC01553_1 | |||||||||
| FC817615.1 | |||||||||
| FE913400.1 | |||||||||
| HGC04539_1 | |||||||||
| DN191157.1 | |||||||||
| CK726018.1 | |||||||||
| Oden_isotig06943 | |||||||||
| EX535050.1 | |||||||||
| BXC00323_1 | |||||||||
| CSC00786_1 | |||||||||
| OOC00256_1 | |||||||||
| TCC01005_1 | |||||||||
| FD514253.1 | |||||||||
| DN190339.1 | |||||||||
| Tcir_isotig14519 | |||||||||
| HG07490 | |||||||||
| DN191095.1 | |||||||||
| CBC02185_2 | |||||||||
| CJC17408_1 | |||||||||
| BE760964.1 | |||||||||
| JI171748.1 | |||||||||
| FE912635.1 | |||||||||
| FD517545.1 | |||||||||
| CK850080.1 | |||||||||
| DN190332.1 | |||||||||
| JI176652.1 | |||||||||
| CBC06904_1 | |||||||||
| JI239334.1 | |||||||||
| TX00490 | |||||||||
| Associated_feature | WBsf222053 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00010550 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028740 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114419 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028737 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072831 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072830 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040237 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020665 | ||||||||
| Expr1030386 | |||||||||
| Expr1144309 | |||||||||
| Expr2010427 | |||||||||
| Expr2028667 | |||||||||
| Drives_construct | WBCnstr00037394 | ||||||||
| Construct_product | WBCnstr00037394 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (309) | |||||||||
| Interaction (87) | |||||||||
| Map_info | Map | II | Position | 3.12398 | Error | 3.5e-05 | |||
| Positive | Positive_clone | C09G5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063976 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
