WormBase Tree Display for Gene: WBGene00000656

WBGene00000656 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: C09G5
  Identity: Version: 1
    Name: CGC_name: col-80 Person_evidence: WBPerson345
      Sequence_name: C09G5.5
      Molecular_name: C09G5.5
        C09G5.5.1
        CE01485
      Other_name: CELE_C09G5.5 Accession_evidence: NDB BX284602
      Public_name: col-80
    DB_info: Database: AceView gene 2K997
        WormQTL gene WBGene00000656
        WormFlux gene WBGene00000656
        NDB locus_tag CELE_C09G5.5
        Panther gene CAEEL|WormBase=WBGene00000656|UniProtKB=Q09456
          family PTHR24637
        NCBI gene 174652
        RefSeq protein NM_063909.9
        SwissProt UniProtAcc Q09456
        TREEFAM TREEFAM_ID TF316783
        UniProt_GCRP UniProtAcc Q09456
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (20)
    RNASeq_FPKM (74)
    GO_annotation: 00053979
      00053980
      00053981
      00107652
    Ortholog (36)
    Paralog (170)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is an ortholog of human COL21A1 (collagen type XXI alpha 1 chain). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9975 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17025)
  Molecular_info: Corresponding_CDS: C09G5.5
    Corresponding_transcript: C09G5.5.1
    Other_sequence (85)
    Associated_feature: WBsf222053
  Experimental_info: RNAi_result: WBRNAi00010550 Inferred_automatically: RNAi_primary
      WBRNAi00028740 Inferred_automatically: RNAi_primary
      WBRNAi00114419 Inferred_automatically: RNAi_primary
      WBRNAi00028737 Inferred_automatically: RNAi_primary
      WBRNAi00072831 Inferred_automatically: RNAi_primary
      WBRNAi00072830 Inferred_automatically: RNAi_primary
      WBRNAi00040237 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020665
      Expr1030386
      Expr1144309
      Expr2010427
      Expr2028667
    Drives_construct: WBCnstr00037394
    Construct_product: WBCnstr00037394
    Microarray_results (18)
    Expression_cluster (309)
    Interaction: WBInteraction000030155
      WBInteraction000101029
      WBInteraction000103822
      WBInteraction000104015
      WBInteraction000104524
      WBInteraction000104615
      WBInteraction000104821
      WBInteraction000105058
      WBInteraction000105248
      WBInteraction000105516
      WBInteraction000105716
      WBInteraction000106599
      WBInteraction000109148
      WBInteraction000109343
      WBInteraction000110223
      WBInteraction000115443
      WBInteraction000116171
      WBInteraction000117654
      WBInteraction000117916
      WBInteraction000119193
      WBInteraction000121556
      WBInteraction000127237
      WBInteraction000138409
      WBInteraction000138874
      WBInteraction000139225
      WBInteraction000147441
      WBInteraction000147537
      WBInteraction000150389
      WBInteraction000150734
      WBInteraction000151302
      WBInteraction000160499
      WBInteraction000163631
      WBInteraction000165028
      WBInteraction000170854
      WBInteraction000171165
      WBInteraction000182244
      WBInteraction000187970
      WBInteraction000190305
      WBInteraction000190643
      WBInteraction000190955
      WBInteraction000192353
      WBInteraction000195846
      WBInteraction000202736
      WBInteraction000215007
      WBInteraction000220884
      WBInteraction000237069
      WBInteraction000237269
      WBInteraction000245977
      WBInteraction000249060
      WBInteraction000251022
      WBInteraction000253317
      WBInteraction000255307
      WBInteraction000257379
      WBInteraction000260637
      WBInteraction000262414
      WBInteraction000268808
      WBInteraction000273826
      WBInteraction000274052
      WBInteraction000285792
      WBInteraction000293005
      WBInteraction000306656
      WBInteraction000310158
      WBInteraction000312886
      WBInteraction000313923
      WBInteraction000317734
      WBInteraction000328563
      WBInteraction000344229
      WBInteraction000344249
      WBInteraction000346090
      WBInteraction000349122
      WBInteraction000349655
      WBInteraction000356437
      WBInteraction000364396
      WBInteraction000366184
      WBInteraction000376913
      WBInteraction000380739
      WBInteraction000389528
      WBInteraction000394305
      WBInteraction000407121
      WBInteraction000420209
      WBInteraction000420917
      WBInteraction000421908
      WBInteraction000429042
      WBInteraction000459622
      WBInteraction000464518
      WBInteraction000465221
      WBInteraction000474509
  Map_info: Map: II Position: 3.12398 Error: 3.5e-05
    Positive: Positive_clone: C09G5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00063976
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene