WormBase Tree Display for Gene: WBGene00000524
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| WBGene00000524 | SMap | S_parent | Sequence | ZK563 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | clc-3 | |||||||
| Sequence_name | ZK563.4 | ||||||||
| Molecular_name (6) | |||||||||
| Other_name | CELE_ZK563.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | clc-3 | ||||||||
| DB_info | Database | AceView | gene | XD992 | |||||
| WormQTL | gene | WBGene00000524 | |||||||
| WormFlux | gene | WBGene00000524 | |||||||
| NDB | locus_tag | CELE_ZK563.4 | |||||||
| NCBI | gene | 180625 | |||||||
| RefSeq | protein | NM_001029822.7 | |||||||
| NM_001029823.6 | |||||||||
| TrEMBL | UniProtAcc | H2KYF7 | |||||||
| Q23532 | |||||||||
| UniProt_GCRP | UniProtAcc | Q23532 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clc | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00032092 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021548 | ||||||||
| 00021549 | |||||||||
| 00021550 | |||||||||
| 00021551 | |||||||||
| 00078776 | |||||||||
| 00107534 | |||||||||
| Ortholog | WBGene00051998 | Caenorhabditis remanei | From_analysis | OMA | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00034771 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00157827 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00126809 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| CBOVI.g3177 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP21.g5548 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g2849 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g10488 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g2450 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g9014 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g5078 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g18442 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g21589 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g16276 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00527.g11875 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-clc-3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold629.g16478 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00050.g2594 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_00846 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_024083 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Sp34_X0272000 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g18746 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | clc-3 encodes a claudin homolog that may regulate ion channels; CLC-3 is worm-specific, with a highly divergent sequence weakly similar to mammalian voltage-dependent calcium channel gamma subunits that are known or suspected to prevent epilepsy in vivo (e.g., stargazin; MGI:1316660); claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. | Paper_evidence | WBPaper00004961 | |||||
| WBPaper00005946 | |||||||||
| WBPaper00005975 | |||||||||
| WBPaper00012762 | |||||||||
| WBPaper00012856 | |||||||||
| WBPaper00012941 | |||||||||
| WBPaper00013626 | |||||||||
| WBPaper00018356 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in epithelial cell-cell adhesion. Located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK563.4a | |||||||
| ZK563.4b | |||||||||
| Corresponding_transcript | ZK563.4a.1 | ||||||||
| ZK563.4b.1 | |||||||||
| Other_sequence | CBC06882_1 | ||||||||
| Associated_feature | WBsf653835 | ||||||||
| WBsf1004605 | |||||||||
| WBsf237168 | |||||||||
| WBsf237169 | |||||||||
| WBsf237170 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00038341 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059519 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081187 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022064 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9465 | ||||||||
| Expr1011435 | |||||||||
| Expr1162936 | |||||||||
| Expr2010043 | |||||||||
| Expr2028284 | |||||||||
| Drives_construct | WBCnstr00037475 | ||||||||
| Construct_product | WBCnstr00014030 | ||||||||
| WBCnstr00037475 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction | WBInteraction000133970 | ||||||||
| WBInteraction000136804 | |||||||||
| WBInteraction000140913 | |||||||||
| WBInteraction000314375 | |||||||||
| WBInteraction000349867 | |||||||||
| WBInteraction000444156 | |||||||||
| Map_info | Map | X | Position | -10.3996 | Error | 0.020116 | |||
| Positive | Positive_clone | ZK563 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4219 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005946 | ||||||||
| WBPaper00013424 | |||||||||
| WBPaper00013425 | |||||||||
| WBPaper00018356 | |||||||||
| WBPaper00023962 | |||||||||
| WBPaper00026406 | |||||||||
| WBPaper00034662 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00039831 | |||||||||
| WBPaper00044402 | |||||||||
| Remark | Sequence connection from [Asano A, Tsukita S] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
