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WormBase Tree Display for Gene: WBGene00000277

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Name Class

WBGene00000277SMapS_parentSequenceC23H4
IdentityVersion1
NameCGC_namecab-1Person_evidenceWBPerson287
Sequence_nameC23H4.1
Molecular_nameC23H4.1
C23H4.1.1
CE17435
C23H4.1.2
Other_nameCELE_C23H4.1Accession_evidenceNDBBX284606
Public_namecab-1
DB_infoDatabaseAceViewgeneXM818
WormQTLgeneWBGene00000277
WormFluxgeneWBGene00000277
NDBlocus_tagCELE_C23H4.1
PanthergeneCAEEL|WormBase=WBGene00000277|UniProtKB=Q93249
familyPTHR23352
NCBIgene181382
RefSeqproteinNM_077635.7
SwissProtUniProtAccQ93249
TREEFAMTREEFAM_IDTF318443
UniProt_GCRPUniProtAccQ93249
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcab
Allele (214)
StrainWBStrain00024085
RNASeq_FPKM (74)
GO_annotation00085642
00085643
00085644
00085645
00085646
00085647
00107160
OrthologWBGene00063272Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00036230Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00142556Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00131741Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00090047Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00222590Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3231Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8745Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15690Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g15376Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6132Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15213Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12098Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16454Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g29895Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g11704Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-cab-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13238Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00261.g8175Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_02400Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023146Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11375Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3530Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0048300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20206Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239731Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00264151Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291020Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0265182Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-140106-58Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-031204-31Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:7899Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
MGI:1099802Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
RGD:1303156Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
Structured_descriptionConcise_descriptionNovel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation; it is expressed in various neurons including ventral cord and tail ganglion neurons; it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase.Paper_evidenceWBPaper00004331
Curator_confirmedWBPerson324
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionInvolved in chemical synaptic transmission; positive regulation of anterior/posterior axon guidance; and ventral cord development. Predicted to be located in membrane and synapse. Is an ortholog of human NPDC1 (neural proliferation, differentiation and control 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC23H4.1
Corresponding_transcriptC23H4.1.1
C23H4.1.2
Other_sequence (74)
Associated_feature (22)
Experimental_infoRNAi_resultWBRNAi00060650Inferred_automaticallyRNAi_primary
WBRNAi00041027Inferred_automaticallyRNAi_primary
WBRNAi00060648Inferred_automaticallyRNAi_primary
WBRNAi00060651Inferred_automaticallyRNAi_primary
WBRNAi00011060Inferred_automaticallyRNAi_primary
WBRNAi00029119Inferred_automaticallyRNAi_primary
WBRNAi00073951Inferred_automaticallyRNAi_primary
WBRNAi00095504Inferred_automaticallyRNAi_primary
WBRNAi00060646Inferred_automaticallyRNAi_primary
WBRNAi00060652Inferred_automaticallyRNAi_primary
WBRNAi00088725Inferred_automaticallyRNAi_primary
WBRNAi00088618Inferred_automaticallyRNAi_primary
WBRNAi00060654Inferred_automaticallyRNAi_primary
WBRNAi00072244Inferred_automaticallyRNAi_primary
WBRNAi00106821Inferred_automaticallyRNAi_primary
WBRNAi00060647Inferred_automaticallyRNAi_primary
WBRNAi00060653Inferred_automaticallyRNAi_primary
WBRNAi00073952Inferred_automaticallyRNAi_primary
WBRNAi00060649Inferred_automaticallyRNAi_primary
WBRNAi00073950Inferred_automaticallyRNAi_primary
WBRNAi00073954Inferred_automaticallyRNAi_primary
WBRNAi00073953Inferred_automaticallyRNAi_primary
Expr_patternExpr1016803
Expr1030181
Expr1145065
Expr2009693
Expr2027932
Microarray_results (29)
Expression_cluster (308)
Interaction (31)
Map_infoMapXPosition7.00899Error0.003434
PositivePositive_cloneC23H4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4173
4210
Pseudo_map_position
Reference (14)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene