WormBase Tree Display for Gene: WBGene00000277
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| WBGene00000277 | SMap | S_parent | Sequence | C23H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cab-1 | Person_evidence | WBPerson287 | |||||
| Sequence_name | C23H4.1 | ||||||||
| Molecular_name | C23H4.1 | ||||||||
| C23H4.1.1 | |||||||||
| CE17435 | |||||||||
| C23H4.1.2 | |||||||||
| Other_name | CELE_C23H4.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | cab-1 | ||||||||
| DB_info | Database | AceView | gene | XM818 | |||||
| WormQTL | gene | WBGene00000277 | |||||||
| WormFlux | gene | WBGene00000277 | |||||||
| NDB | locus_tag | CELE_C23H4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000277|UniProtKB=Q93249 | |||||||
| family | PTHR23352 | ||||||||
| NCBI | gene | 181382 | |||||||
| RefSeq | protein | NM_077635.7 | |||||||
| SwissProt | UniProtAcc | Q93249 | |||||||
| TREEFAM | TREEFAM_ID | TF318443 | |||||||
| UniProt_GCRP | UniProtAcc | Q93249 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cab | ||||||||
| Allele (214) | |||||||||
| Strain | WBStrain00024085 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00085642 | ||||||||
| 00085643 | |||||||||
| 00085644 | |||||||||
| 00085645 | |||||||||
| 00085646 | |||||||||
| 00085647 | |||||||||
| 00107160 | |||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation; it is expressed in various neurons including ventral cord and tail ganglion neurons; it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. | Paper_evidence | WBPaper00004331 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in chemical synaptic transmission; positive regulation of anterior/posterior axon guidance; and ventral cord development. Predicted to be located in membrane and synapse. Is an ortholog of human NPDC1 (neural proliferation, differentiation and control 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C23H4.1 | |||||||
| Corresponding_transcript | C23H4.1.1 | ||||||||
| C23H4.1.2 | |||||||||
| Other_sequence (74) | |||||||||
| Associated_feature (22) | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1016803 | ||||||||
| Expr1030181 | |||||||||
| Expr1145065 | |||||||||
| Expr2009693 | |||||||||
| Expr2027932 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (308) | |||||||||
| Interaction | WBInteraction000050026 | ||||||||
| WBInteraction000136794 | |||||||||
| WBInteraction000138054 | |||||||||
| WBInteraction000203424 | |||||||||
| WBInteraction000211565 | |||||||||
| WBInteraction000225334 | |||||||||
| WBInteraction000226164 | |||||||||
| WBInteraction000252363 | |||||||||
| WBInteraction000259761 | |||||||||
| WBInteraction000272436 | |||||||||
| WBInteraction000283055 | |||||||||
| WBInteraction000297727 | |||||||||
| WBInteraction000305970 | |||||||||
| WBInteraction000318739 | |||||||||
| WBInteraction000324691 | |||||||||
| WBInteraction000353548 | |||||||||
| WBInteraction000356903 | |||||||||
| WBInteraction000368055 | |||||||||
| WBInteraction000379563 | |||||||||
| WBInteraction000386242 | |||||||||
| WBInteraction000392960 | |||||||||
| WBInteraction000395191 | |||||||||
| WBInteraction000398700 | |||||||||
| WBInteraction000405514 | |||||||||
| WBInteraction000413365 | |||||||||
| WBInteraction000541378 | |||||||||
| WBInteraction000547347 | |||||||||
| WBInteraction000556405 | |||||||||
| WBInteraction000575334 | |||||||||
| WBInteraction000575831 | |||||||||
| WBInteraction000579871 | |||||||||
| Map_info | Map | X | Position | 7.00899 | Error | 0.003434 | |||
| Positive | Positive_clone | C23H4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4173 | |||||||
| 4210 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
