WormBase Tree Display for Gene: WBGene00000237
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| WBGene00000237 | Evidence | Person_evidence | WBPerson114 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y71F9AR | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | bam-2 | Person_evidence | WBPerson1804 | |||||
| Sequence_name | Y71F9AR.1 | ||||||||
| Molecular_name | Y71F9AR.1 | ||||||||
| Y71F9AR.1.1 | |||||||||
| CE33243 | |||||||||
| Other_name | Y71F9AR.c | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y71F9AR.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | bam-2 | ||||||||
| DB_info | Database | AceView | gene | 1D518 | |||||
| WormQTL | gene | WBGene00000237 | |||||||
| WormFlux | gene | WBGene00000237 | |||||||
| NDB | locus_tag | CELE_Y71F9AR.1 | |||||||
| NCBI | gene | 171868 | |||||||
| RefSeq | protein | NM_001026638.5 | |||||||
| SwissProt | UniProtAcc | G5ECL4 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECL4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bam | ||||||||
| Allele (246) | |||||||||
| Strain | WBStrain00034912 | ||||||||
| WBStrain00034913 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012045 | ||||||||
| 00012046 | |||||||||
| 00012047 | |||||||||
| 00012048 | |||||||||
| 00012049 | |||||||||
| 00012050 | |||||||||
| 00012051 | |||||||||
| Ortholog (25) | |||||||||
| Structured_description | Concise_description | bam-2 encodes a 1007-residue protein with a predicted N-terminal signalsequence and C-terminal transmembrane sequence, and a central concanavalinA-like lectin/glucanase motif, but no obvious homologs outside ofnematodes; BAM-2 is suggested to be related to neurexins on the basis of weaksimilarities in putatively shared sequence motifs; bam-2 mutants have VCaxon branches that overshoot their normal termination sites too farmedially into vulval epithelium, while showing no other obviousphenotypes; the bam-2 mutant phenotype is rescued by transgenic expressioneither in VulF or in all epidermal cells, even if BAM-2's cytoplasmicdomain is deleted; however, defective branching is observed if bam-2 isexpressed within VC neurons themselves; BAM-2 is thus likely to be apermissive ligand on the surface of VulF cells that attracts branchtermination but need not be restricted to VulF cells alone. | Paper_evidence | WBPaper00006123 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 26 Sep 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in nervous system development. Located in plasma membrane. Expressed in head neurons; somatic gonad; tail neurons; ventral cord neurons; and vulF. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71F9AR.1 | |||||||
| Corresponding_CDS_history | Y71F9AR.1a:wp108 | ||||||||
| Corresponding_transcript | Y71F9AR.1.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature (26) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004802 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058170 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037775 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2767 | ||||||||
| Expr1028652 | |||||||||
| Expr1030151 | |||||||||
| Expr1161588 | |||||||||
| Expr2009529 | |||||||||
| Expr2027766 | |||||||||
| Drives_construct | WBCnstr00000317 | ||||||||
| WBCnstr00000318 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction | WBInteraction000549511 | ||||||||
| Anatomy_function | WBbtf0236 | ||||||||
| WBbtf0237 | |||||||||
| Map_info | Map | I | Position | -5.26906 | Error | 0.003945 | |||
| Positive | Positive_clone | Y71F9AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4775 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006123 | ||||||||
| WBPaper00027316 | |||||||||
| WBPaper00028559 | |||||||||
| WBPaper00053043 | |||||||||
| WBPaper00064805 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
