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WormBase Tree Display for Gene: WBGene00000212

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Name Class

WBGene00000212EvidencePaper_evidenceWBPaper00003086
SMapS_parentSequenceZK455
IdentityVersion1
NameCGC_nameasm-2Person_evidenceWBPerson250
Sequence_nameZK455.4
Molecular_nameZK455.4
ZK455.4.1
CE31674
Other_nameCELE_ZK455.4Accession_evidenceNDBBX284606
Public_nameasm-2
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classasm
Allele (50)
RNASeq_FPKM (74)
GO_annotation (28)
OrthologWBGene00058305Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00037012Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00190086Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00133303Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00098372Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00098375Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00221985Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3552Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10892Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11889Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g7236Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18756Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15834Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21797Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2849Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18702Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28792Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12636Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00373.g9935Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-asm-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold450.g1288Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00297.g8926Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01135Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023773Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_023774Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04042Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14058Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15272Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0087110Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20053Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248445Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00095490Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00264528Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00264529Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00264535Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0034997Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-110411-222Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:11120Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:98325Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1549719Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00000211Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000213Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00014106Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionasm-2 encodes a protein similar to human acid sphingomyelinase (ASM) or sphingomyelin phosphodiesterase 1; the ASM-2 protein has a putative secretory signal peptide at the N-terminus, saposin-like and proline-rich domains and putative N-linked glycosylation sites; asm-2 shows phosphodiesterase activity when expressed in COS-7 cells; like mammalian ASM, asm-2 is probably both intracellular and secreted; northern blot analysis indicates that asm-2 is expressed during post-embryonic development as compared to asm-1 which is expressed at higher levels in the embryo; human ASM is implicated in Niemann-Pick disease type B (OMIM:607608).Paper_evidenceWBPaper00003086
Curator_confirmedWBPerson324
WBPerson1823
WBPerson567
Date_last_updated09 Aug 2006 00:00:00
Automated_descriptionEnables sphingomyelin phosphodiesterase activity. Involved in ceramide biosynthetic process and sphingomyelin catabolic process. Located in extracellular region. Human ortholog(s) of this gene implicated in Niemann-Pick disease type A and Niemann-Pick disease type B. Is an ortholog of human SMPD1 (sphingomyelin phosphodiesterase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:14504Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11120)
DOID:0070112Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11120)
DOID:0070111Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11120)
Molecular_infoCorresponding_CDSZK455.4
Corresponding_CDS_historyZK455.4:wp83
Corresponding_transcriptZK455.4.1
Other_sequence (32)
Associated_featureWBsf654409
WBsf237956
Experimental_infoRNAi_resultWBRNAi00038298Inferred_automaticallyRNAi_primary
WBRNAi00059434Inferred_automaticallyRNAi_primary
WBRNAi00000331Inferred_automaticallyRNAi_primary
Expr_patternExpr1013294
Expr1162861
Expr2009455
Expr2027692
Drives_constructWBCnstr00037660
Construct_productWBCnstr00037660
AntibodyWBAntibody00001822
Microarray_results (18)
Expression_cluster (207)
InteractionWBInteraction000133965
WBInteraction000177307
WBInteraction000290792
Map_infoMapXPosition2.95988Error0.006229
PositivePositive_cloneZK455Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (13)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene