WormBase Tree Display for Gene: WBGene00000093
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| WBGene00000093 | SMap | S_parent | Sequence | Y62E10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | agt-1 | |||||||
| Sequence_name | Y62E10A.5 | ||||||||
| Molecular_name | Y62E10A.5a | ||||||||
| Y62E10A.5a.1 | |||||||||
| CE38250 | |||||||||
| Y62E10A.5b | |||||||||
| CE39872 | |||||||||
| Y62E10A.5b.1 | |||||||||
| Other_name | cAGT-1 | ||||||||
| CELE_Y62E10A.5 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | agt-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | agt | ||||||||
| Allele (27) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP4542 | ||||||||
| Ortholog (30) | |||||||||
| Structured_description | Concise_description | agt-1 encodes an ortholog of the DNA repair enzyme O6-Alkylguanine DNA-alkyltransferase (AGT). | Paper_evidence | WBPaper00004946 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables damaged DNA binding activity and transferase activity, transferring alkyl or aryl (other than methyl) groups. Involved in DNA dealkylation involved in DNA repair. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); endocrine gland cancer (multiple); and high grade glioma (multiple). Is an ortholog of human MGMT (O-6-methylguanine-DNA methyltransferase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (13) | ||||||||
| Molecular_info | Corresponding_CDS | Y62E10A.5a | |||||||
| Y62E10A.5b | |||||||||
| Corresponding_CDS_history | Y62E10A.5:wp140 | ||||||||
| Corresponding_transcript | Y62E10A.5a.1 | ||||||||
| Y62E10A.5b.1 | |||||||||
| Other_sequence | CBC07082_1 | ||||||||
| Associated_feature | WBsf231118 | ||||||||
| WBsf231119 | |||||||||
| WBsf231120 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057853 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00070719 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037674 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037675 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070720 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061945 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021216 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021217 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110764 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021901 | ||||||||
| Expr1161287 | |||||||||
| Expr2009265 | |||||||||
| Expr2027502 | |||||||||
| Drives_construct | WBCnstr00037740 | ||||||||
| Construct_product | WBCnstr00037740 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction | WBInteraction000007965 | ||||||||
| WBInteraction000045813 | |||||||||
| WBInteraction000187174 | |||||||||
| WBInteraction000192098 | |||||||||
| WBInteraction000359067 | |||||||||
| WBInteraction000435725 | |||||||||
| WBInteraction000464204 | |||||||||
| Map_info | Map | IV | Position | 8.65316 | Error | 0.025666 | |||
| Positive | Positive_clone | Y62E10A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004946 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
