WormBase Tree Display for CDS: T21B4.2
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T21B4.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T21B4 | |||
Structure | Source_exons | 1 | 61 | |||
110 | 207 | |||||
516 | 1295 | |||||
DB_info | Database | TrEMBL | UniProtAcc | O18097 | ||
UniProt | UniProtAcc | O18097 | ||||
UniProt_GCRP | UniProtAcc | O18097 | ||||
AlphaFold | entry | O18097 | ||||
NCBI_protein | GI_number | GI:3879952 | ||||
Protein_id | CHROMOSOME_II | CAB03369 | 1 | |||
DB_remark | COL-85 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00000660 | ||||
Corresponding_transcript | T21B4.2.1 | |||||
Corresponding_protein | CE16427 | |||||
Corresponding_PCR_product | cenix:223-e1 | |||||
mv_T21B4.2 | ||||||
sjj_T21B4.2 | ||||||
smd_T21B4.2 | ||||||
Corresponding_oligo_set (18) | ||||||
Matching_cDNA (12) | ||||||
RNAi_result | WBRNAi00097108 | |||||
WBRNAi00035738 | ||||||
WBRNAi00018950 | ||||||
WBRNAi00053694 | ||||||
Microarray_results (19) | ||||||
Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:O18097 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |