WormBase Tree Display for CDS: R05D11.1
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| R05D11.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R05D11 | |||
| Structure | Source_exons | 1 | 93 | |||
| 654 | 1130 | |||||
| 1328 | 1527 | |||||
| 1732 | 2124 | |||||
| 2248 | 2531 | |||||
| 2741 | 2934 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q21733 | ||
| UniProt | UniProtAcc | Q21733 | ||||
| UniProt_GCRP | UniProtAcc | Q21733 | ||||
| AlphaFold | entry | Q21733 | ||||
| NCBI_protein | GI_number | GI:3878879 | ||||
| Protein_id | CHROMOSOME_I | CAA99889 | 1 | |||
| DB_remark | DAF-8 protein; contains similarity to Pfam domains PF03165 (MH1 domain), PF03166 (MH2 domain); contains similarity to Interpro domains IPR008984 (SMAD/FHA domain superfamily), IPR036578 (SMAD MH1 domain superfamily), IPR013790 (Dwarfin), IPR001132 (SMAD domain, Dwarfin-type), IPR017855 (SMAD-like domain superfamily), IPR003619 (MAD homology 1, Dwarfin-type) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000904 | ||||
| Corresponding_transcript | R05D11.1.1 | |||||
| Corresponding_protein | CE06236 | |||||
| Corresponding_PCR_product | cenix:79-d8 | |||||
| mv_R05D11.1 | ||||||
| sjj_R05D11.1 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | adult_Nanopore_Roach_78015 | |||||
| L3_Nanopore_Roach_87684 | Inferred_automatically | transcript_builder.pl | ||||
| yk1255e09.5 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR086D6_1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF086D6_1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00004043 | |||||
| WBRNAi00034595 | ||||||
| WBRNAi00116811 | ||||||
| WBRNAi00051266 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Smad protein daf-8 | Accession_evidence | UniProt | SP:Q21733 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
