WormBase Tree Display for CDS: PPA40197
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| PPA40197 | SMap | S_parent | Sequence | PPA_ChrIII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (13) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S442-2.19 | ||
| DB_remark | PPA-UNC-64 protein; contains similarity to Pfam domains PF00804 (Syntaxin), PF02935 (Cytochrome c oxidase subunit VIIc), PF05739 (SNARE domain); contains similarity to Interpro domains IPR000727 (Target SNARE coiled-coil homology domain), IPR010989 (SNARE), IPR006011 (Syntaxin, N-terminal domain), IPR004202 (Cytochrome c oxidase subunit VIIc), IPR036636 (Cytochrome c oxidase subunit VIIc superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00278566 | ||||
| Corresponding_transcript | PPA40197.1 | |||||
| Corresponding_protein | PP71064 | |||||
| Corresponding_oligo_set | GPL14372_Probes_42288 | |||||
| GPL14372_Probes_42289 | ||||||
| GPL14372_Probes_42290 | ||||||
| GPL14372_Probes_42291 | ||||||
| GPL14372_Probes_42292 | ||||||
| Matching_cDNA (20) | ||||||
| Microarray_results | GPL14372_Probes_42288 | |||||
| GPL14372_Probes_42289 | ||||||
| GPL14372_Probes_42290 | ||||||
| GPL14372_Probes_42291 | ||||||
| GPL14372_Probes_42292 | ||||||
| RNASeq_FPKM | WBls:0000032 | 12.6233 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.72735 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
