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WormBase Tree Display for CDS: PPA39626

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Name Class

PPA39626SMapS_parentSequencePPA_ChrX
StructureSource_exons (22)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S322-2.40
DB_remarkPPA-ADM-2 protein; contains similarity to Pfam domains PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF08516 (ADAM cysteine-rich); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR036436 (Disintegrin domain superfamily), IPR006586 (ADAM, cysteine-rich domain), IPR001762 (Disintegrin domain), IPR001590 (Peptidase M12B, ADAM/reprolysin)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00277995
Corresponding_transcriptPPA39626.1
Corresponding_proteinPP71590
Corresponding_oligo_setGPL14372_Probes_89185
GPL14372_Probes_89186
GPL14372_Probes_89187
Matching_cDNAAW114802Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_89185
GPL14372_Probes_89186
GPL14372_Probes_89187
RNASeq_FPKMWBls:00000321.41815From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.34959From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated