WormBase Tree Display for CDS: PPA39626
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PPA39626 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons (22) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S322-2.40 | ||
DB_remark | PPA-ADM-2 protein; contains similarity to Pfam domains PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF08516 (ADAM cysteine-rich); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR036436 (Disintegrin domain superfamily), IPR006586 (ADAM, cysteine-rich domain), IPR001762 (Disintegrin domain), IPR001590 (Peptidase M12B, ADAM/reprolysin) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00277995 | ||||
Corresponding_transcript | PPA39626.1 | |||||
Corresponding_protein | PP71590 | |||||
Corresponding_oligo_set | GPL14372_Probes_89185 | |||||
GPL14372_Probes_89186 | ||||||
GPL14372_Probes_89187 | ||||||
Matching_cDNA | AW114802 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_89185 | |||||
GPL14372_Probes_89186 | ||||||
GPL14372_Probes_89187 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.41815 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.34959 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |