WormBase Tree Display for CDS: PPA37936
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| PPA37936 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (170) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-46.24 | ||
| DB_remark | PPA-UNC-68 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF00622 (SPRY domain), PF01365 (RIH domain), PF02026 (RyR domain), PF02815 (MIR domain), PF06459 (Ryanodine Receptor TM 4-6), PF08454 (RyR and IP3R Homology associated), PF08709 (Inositol 1,4,5-trisphosphate/ryanodine receptor), PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR014821 (Inositol 1,4,5-trisphosphate/ryanodine receptor), IPR002048 (EF-hand domain), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR036300 (Mir domain superfamily), IPR009460 (Ryanodine Receptor TM 4-6), IPR003032 (Ryanodine receptor Ryr), IPR013662 (RyR/IP3R Homology associated domain), IPR043136 (B30.2/SPRY domain superfamily), IPR003877 (SPRY domain), IPR011992 (EF-hand domain pair), IPR035910 (RyR/IP3 receptor binding core, RIH domain superfamily), IPR005821 (Ion transport domain), IPR000699 (RIH domain), IPR013333 (Ryanodine receptor), IPR016093 (MIR motif) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00276305 | ||||
| Corresponding_transcript | PPA37936.1 | |||||
| Corresponding_protein | PP63492 | |||||
| Corresponding_oligo_set | GPL14372_Probes_56151 | |||||
| GPL14372_Probes_56152 | ||||||
| GPL14372_Probes_56153 | ||||||
| GPL14372_Probes_56154 | ||||||
| GPL14372_Probes_56155 | ||||||
| Microarray_results | GPL14372_Probes_56151 | |||||
| GPL14372_Probes_56152 | ||||||
| GPL14372_Probes_56153 | ||||||
| GPL14372_Probes_56154 | ||||||
| GPL14372_Probes_56155 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.417724 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
