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WormBase Tree Display for CDS: PPA20517

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Name Class

PPA20517SMapS_parentSequencePPA_ChrX
StructureSource_exons (16)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2845-5.59
DB_remarkPPA-UNC-3 protein; contains similarity to Pfam domains PF01833 (IPT/TIG domain), PF16422 (Transcription factor COE1 DNA-binding domain), PF16423 (Transcription factor COE1 helix-loop-helix domain); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR002909 (IPT domain), IPR038173 (Transcription factor COE, DNA-binding domain superfamily), IPR032200 (Transcription factor COE, DNA-binding domain), IPR013783 (Immunoglobulin-like fold), IPR032201 (Transcription factor COE, helix-loop-helix domain), IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR003523 (Transcription factor COE)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00110071
Corresponding_transcriptPPA20517.1
Corresponding_proteinPP65864
Corresponding_oligo_setGPL14372_Probes_22160
GPL14372_Probes_22162
GPL14372_Probes_22163
GPL14372_Probes_74722
GPL14372_Probes_74724
GPL14372_Probes_74725
Microarray_resultsGPL14372_Probes_22160
GPL14372_Probes_22162
GPL14372_Probes_22163
GPL14372_Probes_74722
GPL14372_Probes_74724
GPL14372_Probes_74725
RNASeq_FPKMWBls:00000324.64569From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001015.48674From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2845-5.59Curator_confirmedWBPerson4055
Methodcurated