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WormBase Tree Display for CDS: PPA17107b

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Name Class

PPA17107bEvidenceCurator_confirmedWBPerson4055
SMapS_parentSequencePPA_ChrIV
StructureSource_exons (35)
DB_infoDB_remarkPPA-UNC-26 protein; contains similarity to Pfam domains PF02383 (SacI homology domain), PF03372 (Endonuclease/Exonuclease/phosphatase family), PF08952 (Domain of unknown function (DUF1866)); contains similarity to Interpro domains IPR002013 (SAC domain), IPR000300 (Inositol polyphosphate-related phosphatase), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015047 (Synaptojanin-1/2, RNA recognition motif), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR036691 (Endonuclease/exonuclease/phosphatase superfamily)
OriginFrom_laboratoryHX
SpeciesPristionchus pacificus
PropertiesCodingCDS
Prediction_statusPredicted
IsoformCurator_confirmedWBPerson4055
VisibleGeneWBGene00106661
Corresponding_transcriptPPA17107b.1
Corresponding_proteinPP75431
Corresponding_oligo_setGPL14372_Probes_19752
GPL14372_Probes_19753
GPL14372_Probes_19754
GPL14372_Probes_19756
GPL14372_Probes_71330
Microarray_resultsGPL14372_Probes_19752
GPL14372_Probes_19753
GPL14372_Probes_19754
GPL14372_Probes_19756
GPL14372_Probes_71330
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed19 Sep 2019 11:15:26WBPerson4055
Remark[190919 mh6] This structure has been created based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated