WormBase Tree Display for CDS: PPA12961
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PPA12961 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 27 | |||
354 | 477 | |||||
1930 | 2035 | |||||
2339 | 2405 | |||||
2660 | 2734 | |||||
5473 | 5540 | |||||
5748 | 5840 | |||||
7276 | 7353 | |||||
9512 | 9569 | |||||
9752 | 9826 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-9.16 | ||
DB_remark | PPA-UNC-42 protein; contains similarity to Pfam domain PF00046 (Homeodomain); contains similarity to Interpro domains IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00102515 | ||||
Corresponding_transcript | PPA12961.1 | |||||
Corresponding_protein | PP60164 | |||||
Corresponding_oligo_set | GPL14372_Probes_26258 | |||||
GPL14372_Probes_81081 | ||||||
GPL14372_Probes_81082 | ||||||
Microarray_results | GPL14372_Probes_26258 | |||||
GPL14372_Probes_81081 | ||||||
GPL14372_Probes_81082 | ||||||
RNASeq_FPKM | WBls:0000032 | 5.68195 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-9.16 | Curator_confirmed | WBPerson4055 | |||
Method | curated |