WormBase Tree Display for CDS: OVOC6697
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| OVOC6697 | SMap | S_parent | Sequence | OVOC_OM2_117 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (39) | |||||
| DB_info | DB_remark | OVO-UNC-70 protein; contains similarity to Pfam domains PF00307 (Calponin homology (CH) domain), PF00435 (Spectrin repeat), PF15410 (Pleckstrin homology domain); contains similarity to Interpro domains IPR041681 (Pleckstrin homology domain 9), IPR018159 (Spectrin/alpha-actinin), IPR001715 (Calponin homology domain), IPR002017 (Spectrin repeat), IPR036872 (CH domain superfamily), IPR001849 (Pleckstrin homology domain), IPR016343 (Spectrin, beta subunit), IPR001605 (Pleckstrin homology domain, spectrin-type), IPR011993 (PH-like domain superfamily) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00243506 | ||||
| Corresponding_transcript | OVOC6697.1 | |||||
| Corresponding_protein | OVP06188 | |||||
| Brief_identification | Spectrin beta chain homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 10.5858 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 3.4633 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 53.0512 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 68.2036 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 32.2921 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 34.226 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Method | curated |
