WormBase Tree Display for CDS: OVOC6344
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| OVOC6344 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM2_99 | |||
| Structure | Source_exons | 1 | 9 | |||
| 146 | 272 | |||||
| 916 | 1018 | |||||
| 1175 | 1271 | |||||
| 1474 | 1594 | |||||
| 1933 | 2094 | |||||
| 2249 | 2456 | |||||
| 2571 | 2703 | |||||
| DB_info | DB_remark | OVO-STI-1 protein; contains similarity to Pfam domains PF00515 (Tetratricopeptide repeat), PF13181 (Tetratricopeptide repeat), PF13414 (TPR repeat), PF13424 (Tetratricopeptide repeat), PF17830 (STI1/HOP, DP domain); contains similarity to Interpro domains IPR006636 (Heat shock chaperonin-binding), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR041243 (STI1/HOP, DP domain), IPR001440 (Tetratricopeptide repeat 1) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00243153 | ||||
| Corresponding_transcript | OVOC6344.1 | |||||
| Corresponding_protein | OVP14198 | |||||
| Matching_cDNA | AI111247 | Inferred_automatically | transcript_builder.pl | |||
| Brief_identification | Stress-induced-phosphoprotein 1 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 106.291 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 129.491 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 164.208 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 55.5923 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 366.637 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 387.155 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140425 es9] Splice sites of OVOC6344 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
