WormBase Tree Display for CDS: OVOC603
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OVOC603 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 51 | |||
319 | 479 | |||||
828 | 1052 | |||||
1156 | 1300 | |||||
1611 | 1770 | |||||
1970 | 2202 | |||||
2452 | 2611 | |||||
2969 | 3093 | |||||
3436 | 3534 | |||||
DB_info | DB_remark | OVO-UNC-101 protein; contains similarity to Pfam domains PF00928 (Adaptor complexes medium subunit family), PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily), IPR011012 (Longin-like domain superfamily), IPR001392 (Clathrin adaptor, mu subunit) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00237412 | ||||
Corresponding_transcript | OVOC603.1 | |||||
Corresponding_protein | OVP06174 | |||||
Brief_identification | AP-1 complex subunit mu-1-I homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 3.81406 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 14.3304 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
17.3726 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
7.87673 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 14.6719 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
9.35596 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |