WormBase Tree Display for CDS: OVOC477
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| OVOC477 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons (38) | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF00046 (Homeodomain), PF00096 (Zinc finger, C2H2 type); contains similarity to Interpro domains IPR003604 (Matrin/U1-C-like, C2H2-type zinc finger), IPR001356 (Homeobox domain), IPR036236 (Zinc finger C2H2 superfamily), IPR013087 (Zinc finger C2H2-type), IPR009057 (Homeobox-like domain superfamily) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237286 | ||||
| Corresponding_transcript | OVOC477.1 | |||||
| Corresponding_protein | OVP14155 | |||||
| Matching_cDNA | ovolvulus_GG625|c73_g1_i9 | Inferred_automatically | transcript_builder.pl | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 4.15721 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 12.0792 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 14.2876 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 2.48001 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 6.48112 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 7.4159 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140506 es9] Merged OVOC473, OVOC474, OVOC476 and OVOC477 based on RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
