WormBase Tree Display for CDS: OVOC3890
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| OVOC3890 | SMap | S_parent | Sequence | OVOC_OM2_1 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 151 | |||
| 265 | 405 | |||||
| 874 | 935 | |||||
| 1422 | 1643 | |||||
| 1976 | 2126 | |||||
| 2343 | 2524 | |||||
| 3692 | 3880 | |||||
| 4080 | 4202 | |||||
| 4354 | 4545 | |||||
| DB_info | DB_remark | OVO-UNC-129 protein; contains similarity to Pfam domain PF00019 (Transforming growth factor beta like domain); contains similarity to Interpro domains IPR015615 (Transforming growth factor-beta-related), IPR029034 (Cystine-knot cytokine), IPR001839 (Transforming growth factor-beta, C-terminal) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00240699 | ||||
| Corresponding_transcript | OVOC3890.1 | |||||
| Corresponding_protein | OVP04761 | |||||
| Matching_cDNA | ovolvulus_GG1369|c27_g3_i4 | Inferred_automatically | transcript_builder.pl | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 11.3323 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 12.1023 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
| 14.5507 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 5.25726 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 0.224381 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 0.490926 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
