WormBase Tree Display for CDS: OVOC3475
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| OVOC3475 | SMap | S_parent | Sequence | OVOC_OM1b_199 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 135 | |||
| 395 | 500 | |||||
| 940 | 1052 | |||||
| 1284 | 1388 | |||||
| 1770 | 1946 | |||||
| 2170 | 2283 | |||||
| 2568 | 2641 | |||||
| 2925 | 3030 | |||||
| 3395 | 3553 | |||||
| 3993 | 4172 | |||||
| DB_info | DB_remark | OVO-APM-3 protein; contains similarity to Pfam domain PF00928 (Adaptor complexes medium subunit family); contains similarity to Interpro domains IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily), IPR011012 (Longin-like domain superfamily), IPR001392 (Clathrin adaptor, mu subunit) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00240284 | ||||
| Corresponding_transcript | OVOC3475.1 | |||||
| Corresponding_protein | OVP04525 | |||||
| Matching_cDNA | ovolvulus_GG570|c160_g1_i11 | Inferred_automatically | transcript_builder.pl | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 12.5095 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 17.0015 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 25.6289 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 26.674 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 35.2684 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 41.8181 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Method | curated |
