WormBase Tree Display for CDS: OVOC11728
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| OVOC11728 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1a_13 | |||
| Structure | Source_exons (120) | |||||
| DB_info | DB_remark | OVO-UNC-89 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00069 (Protein kinase domain), PF00621 (RhoGEF domain), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR000219 (Dbl homology (DH) domain), IPR013098 (Immunoglobulin I-set), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR001452 (SH3 domain), IPR013783 (Immunoglobulin-like fold), IPR000719 (Protein kinase domain), IPR011993 (PH-like domain superfamily), IPR013106 (Immunoglobulin V-set domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00248537 | ||||
| Corresponding_transcript | OVOC11728.1 | |||||
| Corresponding_protein | OVP13326 | |||||
| Matching_cDNA | ovolvulus_GG1234|c47_g3_i2 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG1234|c47_g4_i3 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1234|c48_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 23.2852 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 19.5961 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 33.1958 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 6.64747 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 13.4585 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 30.2535 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140303 es9] Merged OVOC11728, OVOC11729, OVOC11730 and OVOC11731 based on RNA-Seq and Compara evidence. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
