WormBase Tree Display for CDS: OVOC1064a
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| OVOC1064a | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_13 | |||
| Structure | Source_exons | 1 | 66 | |||
| 5272 | 5601 | |||||
| 5972 | 6202 | |||||
| 6430 | 6948 | |||||
| 7401 | 7556 | |||||
| 7807 | 7944 | |||||
| 8104 | 8351 | |||||
| 8847 | 9087 | |||||
| DB_info | DB_remark | OVO-UNC-37 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF03920 (Groucho/TLE N-terminal Q-rich domain); contains similarity to Interpro domains IPR001680 (WD40 repeat), IPR005617 (Groucho/TLE, N-terminal Q-rich domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR009146 (Groucho/transducin-like enhancer), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4055 | ||||
| Visible | Gene | WBGene00237873 | ||||
| Corresponding_transcript | OVOC1064a.1 | |||||
| OVOC1064a.2 | ||||||
| Corresponding_protein | OVP02718 | |||||
| Matching_cDNA | AI313777 | Inferred_automatically | transcript_builder.pl | |||
| BE420439 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG640|c116_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG640|c116_g1_i4 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG640|c116_g1_i10 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Transcription factor homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 43.0585 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 22.4498 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
| 24.0457 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| 36.1621 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| WBls:0000664 | 54.9001 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 59.4897 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
