WormBase Tree Display for CDS: K11G12.2
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| K11G12.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K11G12 | |||
| Structure | Source_exons (13) | |||||
| DB_info | Database | SwissProt | UniProtAcc | P48182 | ||
| UniProt | UniProtAcc | P48182 | ||||
| UniProt_GCRP | UniProtAcc | P48182 | ||||
| AlphaFold | entry | P48182 | ||||
| NCBI_protein | GI_number | GI:351062757 | ||||
| Protein_id | CHROMOSOME_X | CCD70794 | 1 | |||
| DB_remark | ACR-2 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR038050 (Neuronal acetylcholine receptor), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR002394 (Nicotinic acetylcholine receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000042 | ||||
| Corresponding_transcript | K11G12.2.1 | |||||
| Corresponding_protein | CE07380 | |||||
| Corresponding_PCR_product | cenix:27-f9 | |||||
| mv_CAA60157 | ||||||
| sjj_K11G12.2 | ||||||
| Corresponding_oligo_set (20) | ||||||
| Matching_cDNA | L2_Nanopore_Roach_5356 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_97697 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_365251 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_276586 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG4620|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_318261 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG4620|c1_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG4620|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| yk805e08.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_150411 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00030261 | |||||
| WBRNAi00066397 | ||||||
| WBRNAi00017018 | ||||||
| WBRNAi00050610 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Acetylcholine receptor subunit beta-type acr-2 | Accession_evidence | UniProt | SP:P48182 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
