WormBase Tree Display for CDS: K11C4.3d
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| K11C4.3d | SMap | S_parent | Sequence | K11C4 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | S6FN00 | ||
| UniProt | UniProtAcc | S6FN00 | ||||
| AlphaFold | entry | S6FN00 | ||||
| NCBI_protein | GI_number | GI:526478166 | ||||
| Protein_id | CHROMOSOME_V | CDG24104 | 1 | |||
| DB_remark | UNC-70 protein; contains similarity to Pfam domains PF00307 (Calponin homology (CH) domain), PF00435 (Spectrin repeat), PF15410 (Pleckstrin homology domain); contains similarity to Interpro domains IPR041681 (Pleckstrin homology domain 9), IPR018159 (Spectrin/alpha-actinin), IPR001715 (Calponin homology domain), IPR002017 (Spectrin repeat), IPR036872 (CH domain superfamily), IPR001849 (Pleckstrin homology domain), IPR016343 (Spectrin, beta subunit), IPR001605 (Pleckstrin homology domain, spectrin-type), IPR011993 (PH-like domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson615 | ||||
| Visible | Gene | WBGene00006803 | ||||
| Corresponding_transcript | K11C4.3d.1 | |||||
| Corresponding_protein | CE48478 | |||||
| Corresponding_PCR_product | cenix:25-d4 | |||||
| mv_AAD49858 | ||||||
| mv_AAD49859 | ||||||
| sjj_K11C4.3 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | young_adult_Nanopore_Roach_54417 | |||||
| L1_Nanopore_Roach_37341 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_80311 | ||||||
| L3_Nanopore_Roach_40480 | ||||||
| L3_Nanopore_Roach_88915 | ||||||
| L3_Nanopore_Roach_75951 | ||||||
| EM_Nanopore_Li_34590 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_218394 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_249815 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (14) | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | Spectrin beta chain | Accession_evidence | UniProt | TR:S6FN00 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 14 Jun 2013 00:00:00 | WBPerson615 | ||||
| Remark | [20130614 js] this isoform is based on RNASeq reads | Curator_confirmed | WBPerson615 | |||
| Method | curated |
