WormBase Tree Display for CDS: F58A3.5
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| F58A3.5 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F58A3 | |||
| Structure | Source_exons | 1 | 178 | |||
| 247 | 377 | |||||
| 540 | 677 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q93805 | ||
| UniProt | UniProtAcc | Q93805 | ||||
| UniProt_GCRP | UniProtAcc | Q93805 | ||||
| AlphaFold | entry | Q93805 | ||||
| NCBI_protein | GI_number | GI:3877835 | ||||
| TREEFAM | TREEFAM_ID | TF315773 | ||||
| Protein_id | CHROMOSOME_X | CAB02670 | 1 | |||
| DB_remark | TTR-31 protein; contains similarity to Pfam domain PF01060 (Transthyretin-like family); contains similarity to Interpro domains IPR038479 (Transthyretin-like superfamily), IPR001534 (Transthyretin-like) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00010225 | ||||
| Corresponding_transcript | F58A3.5.1 | |||||
| Corresponding_protein | CE11360 | |||||
| Corresponding_PCR_product | cenix:163-h3 | |||||
| mv_F58A3.5 | ||||||
| sjj_F58A3.5 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | young_adult_Nanopore_Roach_27632 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_123519 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_7805 | ||||||
| L2_Nanopore_Roach_97357 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_15775 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_7545 | ||||||
| L1_Nanopore_Roach_10446 | ||||||
| L4_Nanopore_Roach_6773 | ||||||
| L3_Nanopore_Roach_80189 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_24090 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_8039 | ||||||
| L3_Nanopore_Roach_92414 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_24028 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_24995 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_4801 | ||||||
| L1_Nanopore_Roach_98218 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_27676 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_23396 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF204D12_1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_223547 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_229614 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_201550 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG689|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR204D12_1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00116056 | |||||
| WBRNAi00015929 | ||||||
| WBRNAi00116053 | ||||||
| WBRNAi00033058 | ||||||
| WBRNAi00116055 | ||||||
| WBRNAi00116054 | ||||||
| WBRNAi00048923 | ||||||
| Microarray_results (16) | ||||||
| Brief_identification | Transthyretin-like family protein | Accession_evidence | UniProt | TR:Q93805 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf131750 | |||||
| Method | curated |
