WormBase Tree Display for Sequence: F56A12

F56A12 DNA: F56A12 26028
  SMap: S_child: Gene_child (11)
      CDS_child: F56A12.1 14802 17212
        F56A12.1:wp137 14802 17212
        F56A12.2:wp138 20479 17552
        F56A12.2a 20479 17552
        F56A12.2b 20479 17552
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g93_x29_V_p 14778 17206
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g177_x29_V_p 15673 15801
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g79_x29_V_m 19214 17555
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g86_x29_V_m 17630 17555
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g89_x29_V_m 20479 19254
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g107_x29_V_m 18426 17555
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g114_x29_V_m 20479 19368
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g111_x29_V_m 19253 18953
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g110_x29_V_m 17630 17555
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g150_x29_V_m 18934 18537
        RNASEQ_embryo_him-8_20dC_post-L1_g39_x29_V_p 14778 17209
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g172_x29_V_m 19253 19103
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g151_x29_V_m 19000 18546
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g204_x29_V_m 18297 17848
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g221_x29_V_p 16184 16252
        RNASEQ_L4_soma_JK1107_no_DNaseI_g143_x29_V_p 15745 15801
        RNASEQ_L4_soma_JK1107_no_DNaseI_g180_x29_V_m 18522 18392
        RNASEQ_L4_soma_JK1107_no_DNaseI_g160_x29_V_m 20412 19448
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g96_x29_V_m 17630 17514
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g128_x29_V_m 18354 17782
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g153_x29_V_p 15748 15801
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g147_x29_V_p 17144 17209
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g86_x29_V_m 20479 18364
        RNASEQ_early_embryo_g34_x29_V_p 14778 17209
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g41_x29_V_p 14778 17209
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g89_x29_V_m 19382 17555
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g91_x29_V_p 14778 17146
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g95_x29_V_m 17639 17555
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g110_x29_V_m 19073 18969
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g119_x29_V_p 15742 17032
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g113_x29_V_m 20479 19440
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g157_x29_V_m 19206 19092
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g75_x29_V_p 14778 17209
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g151_x29_V_m 20412 19412
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g66_x29_V_p 14778 17209
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g141_x29_V_m 20479 19377
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g183_x29_V_m 18333 18223
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g171_x29_V_m 17729 17620
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g137_x29_V_m 19000 18920
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g177_x29_V_m 20410 19449
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g93_x29_V_p 14778 17206
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g147_x29_V_m 18531 18404
        F56A12.gc1 14778 17076
        F56A12.gc2 20492 17511
        ContigV.elegans.jigsaw.3582.mRNA3582 14746 17299
        ContigV.elegans.jigsaw.3583.mRNA3583 20525 17406
        AG1201_RIT5P.3291.T1 3659 3781
        AG1201_RIT5M.2590.T1 11088 10759
        AG1201_RIT5P.1731.T1 11078 11336
        AG1201_RIT5M.2177.T1 11937 11890
        AG1201_F56A12.1.T2 14778 17212
        AG1201_F56A12.1.T1 17144 17212
        AG1201_F56A12.2.T1 20479 17552
        AG1201_F56A12.2.T2 20479 17552
      Transcript (16)
      PCR_product: cenix:44-f10 18143 19012
        cenix:67-c5 16141 17134
        mv_F56A12.1 14803 17210
        mv_F56A12.2 17554 20478
        sjj_F56A12.1 14927 17114
        sjj_F56A12.2 18418 19604
      Allele (382)
      Oligo_set: Aff_F56A12.1 16189 17212
        Aff_F56A12.2 18620 17552
      Feature_object (199)
      Feature_data: F56A12:Polysome 1 26028
        F56A12:TranscriptionallyActiveRegion 1 26028
        F56A12:ChIPSeqTF 1 26028
        F56A12:TRF 1 26028
        F56A12:Dust 1 26028
        F56A12:inverted 1 26028
      Homol_data (18)
  Structure: From: Source: CHROMOSOME_V
    Overlap_right: C15H11 25925
    Overlap_left: Y49A3A
    Clone_left_end: F56A12 1
      C15H11 25925
  DB_info: Database: EMBL NDB_AC Z81551
        NDB_SV Z81551.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Mortimore BJ
    From_laboratory: HX
    Date_directory: 970121
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: F56A12
  Properties: Genomic_canonical
    Checksum: MD5: 2be8590be12052f74fbd4c73c7a67918
    Status: Finished: 21 Jan 1997 00:00:00
      Submitted: 06 Nov 1996 00:00:00
      Annotated: 27 Mar 1997 00:00:00
  Map: Sequence-V Ends: Left: 8142
        Right: 8157
  Interpolated_map_position: V 6.28023
  Assembly_tags: Clone left end 1 4
      25925 25928
    Finished Left 1 4
    annotation 1946 1992 restriction digest confirms this single stranded region is OK
    Finished Right 26028 26025
  Method: Genomic_canonical